3Q8D
E. coli RecO complex with SSB C-terminus
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF11967 | e3q8dA2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF11967 | ECOD (1.6) |
A | PF02565 | e3q8dA1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF02565 | ECOD (1.6) |
B | PF11967 | e3q8dB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF11967 | ECOD (1.6) |
B | PF02565 | e3q8dB2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF02565 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
A | 1.20.1440.120 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | Recombination protein O, C-terminal domain | CATH (4.3.0) |
B | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
B | 1.20.1440.120 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | Recombination protein O, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11967 | Recombination protein O N terminal (RecO_N) | Recombination protein O N terminal | Recombination protein O (RecO) is involved in DNA repair and Pfam:PF00470 pathway recombination. This domain forms a beta barrel structure. | Domain | |
PF02565 | Recombination protein O C terminal (RecO_C) | Recombination protein O C terminal | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR022572 | DNA replication/recombination mediator RecO, N-terminal | Domain | |
IPR042242 | Recombination protein O, C-terminal | Homologous Superfamily | |
IPR037278 | ARFGAP/RecO-like zinc finger | Homologous Superfamily | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR003717 | Recombination protein O, RecO | Family | |
C [auth E], D [auth F] | IPR011344 | Single-stranded DNA-binding protein | Family |
C [auth E], D [auth F] | IPR000424 | Primosome PriB/single-strand DNA-binding | Family |
C [auth E], D [auth F] | IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily |