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 3P2K | pdb_00003p2k

Structure of an antibiotic related Methyltransferase

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DDynamin_Ne3p2kD1 A: alpha arraysX: OB-foldH: Nucleic acid-binding proteinT: Nucleic acid-binding proteinF: Dynamin_NECOD (v295.2)
CDynamin_Ne3p2kC1 A: alpha arraysX: OB-foldH: Nucleic acid-binding proteinT: Nucleic acid-binding proteinF: Dynamin_NECOD (v295.2)
BDynamin_Ne3p2kB1 A: alpha arraysX: OB-foldH: Nucleic acid-binding proteinT: Nucleic acid-binding proteinF: Dynamin_NECOD (v295.2)
ADynamin_Ne3p2kA1 A: alpha arraysX: OB-foldH: Nucleic acid-binding proteinT: Nucleic acid-binding proteinF: Dynamin_NECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
C3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
B3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
A3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)

AMR Gene: CARD Annotation CARD Database Homepage

ChainsAccessionShort NameDescriptionProvenance Source (Version)
A, B, C, D
ARO:3002665npmANpmA is a plasmid-mediated aminoglycoside-resistance 16S rRNA methyltransferase by interfering with aminoglycoside binding with the A site of 16S rRNA through N-1 methylation at position A1408.CARD (4.0.2)

AMR Gene Family: CARD Annotation CARD Database Homepage

ChainsAccessionGene FamilyDrug Class Resistance MachanismProvenance Source (Version)
A, B, C, D
ARO:300427216S rRNA methyltransferase (A1408)aminoglycoside antibioticantibiotic target alterationCARD (4.0.2)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A, B, C, D
IPR05626216S rRNA (adenine(1408)-N(1))-methyltransferaseFamily