3ON9 | pdb_00003on9

The SECRET domain from Ectromelia virus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	SECRET domain-like	8049162	4006383	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	VCCI-like	8092718	3001493	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	VCCI-like	8092718	3001493	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CrmD_SECRET	e3on9A1	A: a/b three-layered sandwiches	X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	H: Soluble secreted chemokine inhibitor, VCCI	T: Soluble secreted chemokine inhibitor, VCCI	F: CrmD_SECRET	ECOD (v294.1)
B	FeoB_Cyto	e3on9B1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FeoB_Cyto	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.240.20	Mainly Beta	Sandwich	Viral Chemokine Inhibitor	Chain A	CATH (4.3.0)
B	2.60.240.20	Mainly Beta	Sandwich	Viral Chemokine Inhibitor	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Tumour necrosis factor receptor	molecular transducer activity transmembrane signaling receptor activity signaling receptor activity tumor necrosis factor receptor activity death receptor activity protein binding binding cytokine binding tumor necrosis factor binding	regulation of cellular process catabolic process positive regulation of protein metabolic process positive regulation of biological process positive regulation of membrane protein ectodomain proteolysis macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process regulation of proteolysis proteolysis membrane protein proteolysis positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of cellular process catabolic process positive regulation of protein metabolic process positive regulation of biological process positive regulation of membrane protein ectodomain proteolysis macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process regulation of proteolysis proteolysis membrane protein proteolysis positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process membrane protein ectodomain proteolysis regulation of membrane protein ectodomain proteolysis regulation of biological process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process positive regulation of proteolysis metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051670	TNF and chemokine receptor-like	Family
A, B	IPR010806	Poxvirus, TNF receptor-II, C-terminal	Domain
A, B	IPR001368	TNFR/NGFR cysteine-rich region	Domain
A, B	IPR034059	Tumor necrosis factor receptor, N-terminal, viral	Domain
A, B	IPR011172	Poxvirus, TNF-alpha receptor-II	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.