3OMY

Crystal structure of the pED208 TraM N-terminal domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3omya_	All alpha proteins	IHF-like DNA-binding proteins	IHF-like DNA-binding proteins	automated matches	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d3omyb_	All alpha proteins	IHF-like DNA-binding proteins	IHF-like DNA-binding proteins	automated matches	automated matches	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	DNA-binding domain (fragment?) of the TraM protein	8073274	4003039	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	IHF-like DNA-binding proteins	8073275	3000426	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	IHF-like DNA-binding proteins	8073275	3000426	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF05261	e3omyA1	A: alpha arrays	X: HTH	H: DNA-binding domain of TraM protein (From Topology)	T: DNA-binding domain of TraM protein	F: PF05261	ECOD (1.6)
B	PF05261	e3omyB1	A: alpha arrays	X: HTH	H: DNA-binding domain of TraM protein (From Topology)	T: DNA-binding domain of TraM protein	F: PF05261	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.450	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	TraM protein, DNA-binding	CATH (4.3.0)
B	1.10.10.450	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	TraM protein, DNA-binding	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05261	TraM protein, DNA-binding (Tra_M)	TraM protein, DNA-binding	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Protein traM	DNA binding binding organic cyclic compound binding nucleic acid binding	-	intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR042073	TraM, DNA-binding domain	Homologous Superfamily
A, B	IPR007925	Relaxosome protein TraM	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.