3O8C
Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth B] | PF02907 | e3o8cB8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF02907 | ECOD (1.6) |
C [auth B] | PF22027 | e3o8cB5 | A: alpha arrays | X: C-terminal helical domain of RNA helicase (From Topology) | H: C-terminal helical domain of RNA helicase (From Topology) | T: C-terminal helical domain of RNA helicase | F: PF22027 | ECOD (1.6) |
C [auth B] | F_UNCLASSIFIED | e3o8cB7 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth B] | PF07652 | e3o8cB6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF07652 | ECOD (1.6) |
A | PF02907 | e3o8cA8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF02907 | ECOD (1.6) |
A | PF22027 | e3o8cA5 | A: alpha arrays | X: C-terminal helical domain of RNA helicase (From Topology) | H: C-terminal helical domain of RNA helicase (From Topology) | T: C-terminal helical domain of RNA helicase | F: PF22027 | ECOD (1.6) |
A | F_UNCLASSIFIED | e3o8cA7 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF07652 | e3o8cA6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF07652 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth B] | 2.40.10.120 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
C [auth B] | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
C [auth B] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
C [auth B] | 1.10.820.10 | Mainly Alpha | Orthogonal Bundle | RNA Helicase | Chain A, domain 3 | CATH (4.3.0) |
A | 2.40.10.120 | Mainly Beta | Beta Barrel | Thrombin, subunit H | CATH (4.3.0) | |
A | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.10.820.10 | Mainly Alpha | Orthogonal Bundle | RNA Helicase | Chain A, domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF07652 | Flavivirus DEAD domain (Flavi_DEAD) | Flavivirus DEAD domain | - | Domain |
A, C [auth B] | PF02907 | Hepatitis C virus NS3 protease (Peptidase_S29) | Hepatitis C virus NS3 protease | Hepatitis C virus NS3 protein is a serine protease which has a trypsin-like fold. The non-structural (NS) protein NS3 is one of the NS proteins involved in replication of the HCV genome. NS2-3 proteinase, a zinc-dependent enzyme, performs a single p ... | Domain |