3O44 | pdb_00003o44

Crystal Structure of the Vibrio cholerae Cytolysin (HlyA) Heptameric Pore

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e3o44A4	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.1)
B	SurA_N	e3o44B1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
D	SurA_N	e3o44D1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
E	SurA_N	e3o44E1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
F	SurA_N	e3o44F1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
H	SurA_N	e3o44H1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
I	SurA_N	e3o44I1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
J	SurA_N	e3o44J1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
K	SurA_N	e3o44K1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
L	SurA_N	e3o44L1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
N	SurA_N	e3o44N1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
M	SurA_N	e3o44M1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
G	SurA_N	e3o44G1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)
C	SurA_N	e3o44C1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SurA_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
A	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
A	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
A	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
B	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
B	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
B	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
B	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
D	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
D	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
D	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
D	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
E	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
E	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
E	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
E	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
F	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
F	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
F	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
F	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
H	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
H	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
H	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
H	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
I	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
I	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
I	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
I	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
J	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
J	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
J	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
J	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
K	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
K	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
K	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
K	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
L	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
L	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
L	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
L	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
N	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
N	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
N	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
N	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
M	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
M	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
M	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
M	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
G	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
G	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
G	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
G	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
C	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (4.3.0)
C	6.20.40.20	Special	Other non-globular	Porin MspA ribbon fold	Leukocidin/Hemolysin toxin, pre-stem domain	CATH (4.3.0)
C	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
C	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	PF07968	Leukocidin/Hemolysin toxin family (Leukocidin)	Leukocidin/Hemolysin toxin family		Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	PF16458	Beta-prism lectin (Beta-prism_lec)	Beta-prism lectin	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	Hemolysin	binding carbohydrate binding toxin activity identical protein binding protein binding	biological process involved in interspecies interaction between organisms cytolysis in another organism cellular process disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing	cellular anatomical structure extracellular region host cell plasma membrane host cellular component host cell part host cell membrane other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR043080	Hemolytic toxin, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR016183	Leukocidin/Hemolysin toxin	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR036435	Leukocidin/porin MspA superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR022220	Hemolytic toxin, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR044883	Hemolysin, pre-stem domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR036404	Jacalin-like lectin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR032496	Hemolysin, beta-prism lectin	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR035992	Ricin B-like lectins	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR000772	Ricin B, lectin domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	OPM	Transmembrane	Beta-barrel transmembrane	Pore-forming beta-sheet toxins	HlyA hemolysin (n=14,S=14)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes	Cytolysin pore-forming toxin