Crystal Structure of UreE from Helicobacter pylori (Ni2+ bound form)
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | Sdh_cyt | e3ny0D1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Sdh_cyt | ECOD (v294.1) |
| C | Sdh_cyt | e3ny0C1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Sdh_cyt | ECOD (v294.1) |
| B | Sdh_cyt | e3ny0B1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Sdh_cyt | ECOD (v294.1) |
| A | Sdh_cyt | e3ny0A1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: Sdh_cyt | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 2.60.260.20 | Mainly Beta | Sandwich | HSP40/DNAj peptide-binding domain | Urease metallochaperone UreE, N-terminal domain | CATH (4.3.0) |
| D | 3.30.70.790 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | UreE, C-terminal domain | CATH (4.3.0) |
| C | 2.60.260.20 | Mainly Beta | Sandwich | HSP40/DNAj peptide-binding domain | Urease metallochaperone UreE, N-terminal domain | CATH (4.3.0) |
| C | 3.30.70.790 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | UreE, C-terminal domain | CATH (4.3.0) |
| B | 2.60.260.20 | Mainly Beta | Sandwich | HSP40/DNAj peptide-binding domain | Urease metallochaperone UreE, N-terminal domain | CATH (4.3.0) |
| B | 3.30.70.790 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | UreE, C-terminal domain | CATH (4.3.0) |
| A | 2.60.260.20 | Mainly Beta | Sandwich | HSP40/DNAj peptide-binding domain | Urease metallochaperone UreE, N-terminal domain | CATH (4.3.0) |
| A | 3.30.70.790 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | UreE, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02814 | UreE urease accessory protein, N-terminal domain (UreE_N) | UreE urease accessory protein, N-terminal domain | UreE is a urease accessory protein. Urease Pfam:PF00449 hydrolyses urea into ammonia and carbamic acid. | Domain | |
| PF05194 | UreE urease accessory protein, C-terminal domain (UreE_C) | UreE urease accessory protein, C-terminal domain | UreE is a urease accessory protein. Urease Pfam:PF00449 hydrolyses urea into ammonia and carbamic acid. The C-terminal region of members of this family contains a His rich Nickel binding site. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR036118 | UreE urease accessory, N-terminal domain superfamily | Homologous Superfamily | |
| IPR007864 | Urease accessory protein UreE, C-terminal domain | Domain | |
| IPR012406 | Urease accessory protein UreE | Family | |
| IPR004029 | UreE urease accessory, N-terminal | Domain |














