3NQY

Crystal structure of the autoprocessed complex of Vibriolysin MCP-02 with a single point mutation E346A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth B]	d3nqyb_	Alpha and beta proteins (a+b)	Zincin-like	Metalloproteases ('zincins'), catalytic domain	Thermolysin-like	automated matches	(Pseudoalteromonas sp. SM9913 ) [TaxId: 234831 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2B Superfamily	Metalloproteases (zincins) catalytic domain	8092134	3001975	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	FTP/YycH/YycI-like	8092132	3002371	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	Peptidase_M4_C	e3nqyB1	A: mixed a+b and a/b	X: Zincin-like	H: Metalloproteases (zincins) catalytic domain (From Topology)	T: Metalloproteases (zincins) catalytic domain	F: Peptidase_M4_C	ECOD (1.6)
B [auth A]	FTP	e3nqyA1	A: a+b two layers	X: Cystatin-like	H: Cystatin/monellin (From Topology)	T: Cystatin/monellin	F: FTP	ECOD (1.6)
B [auth A]	PepSY	e3nqyA2	A: a+b two layers	X: Cystatin-like	H: Cystatin/monellin (From Topology)	T: Cystatin/monellin	F: PepSY	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth B]	3.10.170.10	Alpha Beta	Roll	Elastase	domain 1	CATH (4.3.0)
A [auth B]	1.10.390.10	Mainly Alpha	Orthogonal Bundle	Neutral Protease	domain 2	CATH (4.3.0)
B [auth A]	3.10.450.490	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
B [auth A]	3.10.450.40	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B]	PF01447	Thermolysin metallopeptidase, catalytic domain (Peptidase_M4)	Thermolysin metallopeptidase, catalytic domain	-	Domain
A [auth B]	PF02868	Thermolysin metallopeptidase, alpha-helical domain (Peptidase_M4_C)	Thermolysin metallopeptidase, alpha-helical domain	-	Domain
B [auth A]	PF03413	Peptidase propeptide and YPEB domain (PepSY)	Peptidase propeptide and YPEB domain	This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis ...	This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	Domain
B [auth A]	PF07504	Fungalysin/Thermolysin Propeptide Motif (FTP)	Fungalysin/Thermolysin Propeptide Motif	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	Secreted metalloprotease Mcp02	cation binding ion binding binding metal ion binding small molecule binding peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity	organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	-
B [auth A]	Secreted metalloprotease Mcp02	cation binding ion binding binding metal ion binding small molecule binding peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity	organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B]	IPR001570	Peptidase M4, C-terminal	Domain
A [auth B]	IPR013856	Peptidase M4 domain	Domain
A [auth B]	IPR027268	Peptidase M4/M1, CTD superfamily	Homologous Superfamily
A [auth B]	IPR011096	FTP domain	Domain
A [auth B]	IPR025711	PepSY domain	Domain
A [auth B]	IPR007280	Peptidase, C-terminal, archaeal/bacterial	Domain
A [auth B]	IPR023612	Peptidase M4	Family
B [auth A]	IPR001570	Peptidase M4, C-terminal	Domain
B [auth A]	IPR013856	Peptidase M4 domain	Domain
B [auth A]	IPR027268	Peptidase M4/M1, CTD superfamily	Homologous Superfamily
B [auth A]	IPR011096	FTP domain	Domain
B [auth A]	IPR025711	PepSY domain	Domain
B [auth A]	IPR007280	Peptidase, C-terminal, archaeal/bacterial	Domain
B [auth A]	IPR023612	Peptidase M4	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.