3NFG | pdb_00003nfg

Crystal structure of Dimerization module of RNA polymerase I subcomplex A49/A34.5

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d3nfgp_	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A34.5, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
N	d3nfgn1	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A34.5, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
N	d3nfgn2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
L	d3nfgl1	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A34.5, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
L	d3nfgl2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
J	d3nfgj1	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A34.5, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
J	d3nfgj2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
H	d3nfgh1	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A34.5, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
H	d3nfgh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
F	d3nfgf1	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A34.5, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
F	d3nfgf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
D	d3nfgd1	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A34.5, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
D	d3nfgd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
B	d3nfgb1	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A34.5, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
B	d3nfgb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
O	d3nfgo_	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A49, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
M	d3nfgm_	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A49, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
K	d3nfgk_	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A49, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
I	d3nfgi_	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A49, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
G	d3nfgg_	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A49, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
E	d3nfge_	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A49, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
C	d3nfgc_	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A49, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)
A	d3nfga_	All beta proteins	triple barrel	Rap30/74 interaction domain-like	RNA polymerase I A49/34.5, interaction domains	RNA polymerase I subunit A49, interaction domain	Yeast (Nakaseomyces glabratus ) [TaxId: 5478 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	RNA_polI_A34	e3nfgP2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_polI_A34	ECOD (1.6)
N	RNA_polI_A34	e3nfgN2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_polI_A34	ECOD (1.6)
L	RNA_polI_A34	e3nfgL2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_polI_A34	ECOD (1.6)
J	RNA_polI_A34	e3nfgJ2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_polI_A34	ECOD (1.6)
H	RNA_polI_A34	e3nfgH2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_polI_A34	ECOD (1.6)
F	RNA_polI_A34	e3nfgF2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_polI_A34	ECOD (1.6)
D	RNA_polI_A34	e3nfgD2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_polI_A34	ECOD (1.6)
B	RNA_polI_A34	e3nfgB2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_polI_A34	ECOD (1.6)
O	RNA_pol_I_A49_1st	e3nfgO2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_pol_I_A49_1st	ECOD (1.6)
M	RNA_pol_I_A49_1st	e3nfgM2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_pol_I_A49_1st	ECOD (1.6)
K	RNA_pol_I_A49_1st	e3nfgK2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_pol_I_A49_1st	ECOD (1.6)
I	RNA_pol_I_A49_1st	e3nfgI2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_pol_I_A49_1st	ECOD (1.6)
G	RNA_pol_I_A49_1st	e3nfgG2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_pol_I_A49_1st	ECOD (1.6)
E	RNA_pol_I_A49_1st	e3nfgE2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_pol_I_A49_1st	ECOD (1.6)
C	RNA_pol_I_A49_1st	e3nfgC2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_pol_I_A49_1st	ECOD (1.6)
A	RNA_pol_I_A49_1st	e3nfgA2	A: beta complex topology	X: triple barrel (From Homology)	H: triple barrel	T: RNA polymerase I subunits A49/A34.5 dimerization domains	F: RNA_pol_I_A49_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
P	6.20.250.70	Special	Other non-globular	Double Stranded RNA Binding Domain	CATH (4.3.0)
N	6.20.250.70	Special	Other non-globular	Double Stranded RNA Binding Domain	CATH (4.3.0)
L	6.20.250.70	Special	Other non-globular	Double Stranded RNA Binding Domain	CATH (4.3.0)
J	6.20.250.70	Special	Other non-globular	Double Stranded RNA Binding Domain	CATH (4.3.0)
H	6.20.250.70	Special	Other non-globular	Double Stranded RNA Binding Domain	CATH (4.3.0)
F	6.20.250.70	Special	Other non-globular	Double Stranded RNA Binding Domain	CATH (4.3.0)
D	6.20.250.70	Special	Other non-globular	Double Stranded RNA Binding Domain	CATH (4.3.0)
B	6.20.250.70	Special	Other non-globular	Double Stranded RNA Binding Domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L, N, P	PF08208	DNA-directed RNA polymerase I subunit RPA34.5 (RNA_polI_A34)	DNA-directed RNA polymerase I subunit RPA34.5	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P	DNA-directed RNA polymerase I subunit RPA34	DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process transcription by RNA polymerase I metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process transcription by RNA polymerase I metabolic process cellular process macromolecule metabolic process termination of RNA polymerase I transcription nucleolar large rRNA transcription by RNA polymerase I transcription elongation by RNA polymerase I DNA-templated transcription elongation rRNA transcription rRNA metabolic process DNA-templated transcription initiation transcription initiation at RNA polymerase I promoter	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membraneless organelle catalytic complex intracellular membraneless organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membraneless organelle catalytic complex intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus transferase complex, transferring phosphorus-containing groups organelle lumen organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen
A, C, E, G, I A, C, E, G, I, K, M, O	DNA-directed RNA polymerase I subunit RPA49	DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process transcription by RNA polymerase I metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process transcription by RNA polymerase I metabolic process cellular process macromolecule metabolic process termination of RNA polymerase I transcription nucleolar large rRNA transcription by RNA polymerase I transcription elongation by RNA polymerase I DNA-templated transcription elongation rRNA transcription rRNA metabolic process DNA-templated transcription initiation transcription initiation at RNA polymerase I promoter	membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membraneless organelle catalytic complex intracellular membraneless organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure RNA polymerase I complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membraneless organelle catalytic complex intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus transferase complex, transferring phosphorus-containing groups organelle lumen organelle RNA polymerase complex DNA-directed RNA polymerase complex intracellular protein-containing complex nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P	IPR053263	Eukaryotic RPA34 RNA polymerase subunit	Family
B, D, F, H, J B, D, F, H, J, L, N, P	IPR013240	DNA-directed RNA polymerase I, subunit RPA34	Family
A, C, E, G, I A, C, E, G, I, K, M, O	IPR009668	RNA polymerase I associated factor, A49-like	Family