3MJ9
Crystal structure of JAML in complex with the stimulatory antibody HL4E10
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth L] | d3mj9l1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Cricetulus migratorius ) [TaxId: 10032 ], | SCOPe (2.08) |
C [auth H] | d3mj9h_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Cricetulus migratorius ) [TaxId: 10032 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | V-set_9 | e3mj9A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_9 | ECOD (1.6) |
B [auth L] | C1-set_1 | e3mj9L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
B [auth L] | V-set_3 | e3mj9L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
C [auth H] | V-set_8 | e3mj9H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth H] | C1-set_1 | e3mj9H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
JAML (Junctional adhesion molecule-like) | 2V-LIKE | Mus musculus (house mouse) | AMICA1*01 | V-LIKE-DOMAIN V-LIKE | RPI | 2V-LIKE | IMGT (202415-0) | |
B [auth L] | HL4E10 Fab | L-LAMBDA | Rattus norvegicus (Norway rat) | IGLV4S1*01, IGLJ3*01, IGLJ1*01, IGLC2*01, IGLC4*01 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FAB-GAMMA-2B_LAMBDA | IMGT (202415-0) |
C [auth H] | HL4E10 Fab | VH-CH1 | Rattus norvegicus (Norway rat) | IGHV2-19*01, IGHJ2*01, IGHG2B*01 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-2B_LAMBDA | IMGT (202415-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth L] | Light Chain | IGLV3 | Lambda | junctional adhesion molecule-like | SAbDab (2024-04-19) |
C [auth H] | Heavy Chain | IGHV2 | - | junctional adhesion molecule-like | SAbDab (2024-04-19) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR003599 | Immunoglobulin subtype | Domain | |
IPR003598 | Immunoglobulin subtype 2 | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR000920 | Myelin P0 protein-related | Family | |
IPR013106 | Immunoglobulin V-set domain | Domain | |
IPR007110 | Immunoglobulin-like domain | Domain |