3MHV
Crystal Structure of Vps4 and Vta1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF09336,PF17862 | e3mhvC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF09336,PF17862 | ECOD (1.6) |
B [auth A] | PF18097 | e3mhvA1 | A: alpha bundles | X: Spectrin repeat-like | H: MIT domain (From Topology) | T: MIT domain | F: PF18097 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B [auth A] | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C] | PF09336 | Vps4 C terminal oligomerisation domain (Vps4_C) | Vps4 C terminal oligomerisation domain | This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation [1]. | Domain |
B [auth A] | PF18097 | Vta1 C-terminal domain (Vta1_C) | Vta1 C-terminal domain | This is the C-terminal domain of Vta1 proteins Pfam:PF04652 . Structural and functional analysis indicate that this C-terminal domain promotes the ATP-dependent double ring assembly of Vps4. Furthermore, it has been shown that it is necessary and suf ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C] | IPR003593 | AAA+ ATPase domain | Domain |
A [auth C] | IPR003959 | ATPase, AAA-type, core | Domain |
A [auth C] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
A [auth C] | IPR007330 | MIT domain | Domain |
A [auth C] | IPR041569 | AAA ATPase, AAA+ lid domain | Domain |
A [auth C] | IPR015415 | Spastin/Vps4, C-terminal | Domain |
A [auth C] | IPR045253 | Vacuolar protein sorting-associated protein 4, MIT domain | Domain |
A [auth C] | IPR003960 | ATPase, AAA-type, conserved site | Conserved Site |
A [auth C] | IPR036181 | MIT domain superfamily | Homologous Superfamily |
B [auth A] | IPR039431 | Vta1/callose synthase, N-terminal | Domain |
B [auth A] | IPR023175 | Vta1/Callose synthase, N-terminal domain superfamily | Homologous Superfamily |
B [auth A] | IPR041212 | Vta1, C-terminal | Domain |
B [auth A] | IPR044538 | Vacuolar protein sorting-associated protein Vta1-like | Family |