3M7V | pdb_00003m7v

Crystal structure of phosphopentomutase from streptococcus mutans

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3m7va1	Alpha and beta proteins (a/b)	Alkaline phosphatase-like	Alkaline phosphatase-like	DeoB catalytic domain-like	Phosphopentomutase DeoB	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
A	d3m7va2	Alpha and beta proteins (a+b)	DeoB insert domain-like	DeoB insert domain-like	DeoB insert domain-like	Phosphopentomutase DeoB	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
B	d3m7vb1	Alpha and beta proteins (a/b)	Alkaline phosphatase-like	Alkaline phosphatase-like	DeoB catalytic domain-like	Phosphopentomutase DeoB	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
B	d3m7vb2	Alpha and beta proteins (a+b)	DeoB insert domain-like	DeoB insert domain-like	DeoB insert domain-like	Phosphopentomutase DeoB	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	DeoB-like	8030164	4003235	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Alkaline phosphatase-like	8042543	3001353	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DeoB insert domain-like	8042544	3000196	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Alkaline phosphatase-like	8042543	3001353	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Alkaline phosphatase-like	8042543	3001353	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DeoB insert domain-like	8042544	3000196	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Metalloenzyme	e3m7vA1	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Metalloenzyme	ECOD (v294.1)
B	Aldedh	e3m7vB2	A: a/b three-layered sandwiches	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	CATH (4.3.0)
A	3.30.70.1250	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phosphopentomutase	CATH (4.3.0)
B	3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	CATH (4.3.0)
B	3.30.70.1250	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phosphopentomutase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01676	Metalloenzyme superfamily (Metalloenzyme)	Metalloenzyme superfamily	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Phosphopentomutase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding manganese ion binding transition metal ion binding isomerase activity intramolecular phosphotransferase activity catalytic activity phosphopentomutase activity intramolecular transferase activity	carbohydrate derivative catabolic process catabolic process carbohydrate derivative metabolic process organophosphate catabolic process deoxyribose phosphate catabolic process organophosphate metabolic process 2-deoxyribose 1-phosphate catabolic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process metabolic compound salvage biosynthetic process 5-phosphoribose 1-diphosphate biosynthetic process carbohydrate derivative catabolic process catabolic process carbohydrate derivative metabolic process organophosphate catabolic process deoxyribose phosphate catabolic process organophosphate metabolic process 2-deoxyribose 1-phosphate catabolic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process metabolic compound salvage biosynthetic process 5-phosphoribose 1-diphosphate biosynthetic process ribose phosphate metabolic process carbohydrate derivative biosynthetic process 5-phosphoribose 1-diphosphate metabolic process organophosphate biosynthetic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process primary metabolic process nucleotide metabolic process nucleobase-containing compound metabolic process nucleobase-containing small molecule metabolic process small molecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR010045	Phosphopentomutase	Family
A, B	IPR006124	Metalloenzyme	Domain
A, B	IPR017850	Alkaline-phosphatase-like, core domain superfamily	Homologous Superfamily
A, B	IPR024052	Phosphopentomutase DeoB cap domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.