Crystal structure of Putative NADH dehydrogenase/NAD(P)H nitroreductase (BDI_1728) from Parabacteroides distasonis ATCC 8503 at 1.86 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d3m5kb_ | Alpha and beta proteins (a+b) | FMN-dependent nitroreductase-like | FMN-dependent nitroreductase-like | automated matches | automated matches | (Parabacteroides distasonis ATCC 8503 ) [TaxId: 435591 ], | SCOPe (2.08) |
| A | d3m5ka_ | Alpha and beta proteins (a+b) | FMN-dependent nitroreductase-like | FMN-dependent nitroreductase-like | automated matches | automated matches | (Parabacteroides distasonis ATCC 8503 ) [TaxId: 435591 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | FMN-dependent nitroreductase-like | 8058727 | 3001947 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | NADH oxidase/flavin reductase | 8058726 | 4001599 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | FMN-dependent nitroreductase-like | 8058727 | 3001947 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | PBP | e3m5kB1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Immunoglobulin-related | T: PEBP-like | F: PBP | ECOD (v294.1) |
| A | Ras | e3m5kA1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Metalloproteases (zincins) catalytic domain | T: Metalloproteases (zincins) catalytic domain | F: Ras | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.40.109.10 | Alpha Beta | 3-Layer(aba) Sandwich | NADH Oxidase | NADH Oxidase | CATH (4.3.0) |
| A | 3.40.109.10 | Alpha Beta | 3-Layer(aba) Sandwich | NADH Oxidase | NADH Oxidase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00881 | Nitroreductase family (Nitroreductase) | Nitroreductase family | The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Putative NADH dehydrogenase/NAD(P)H nitroreductase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR050627 | Nitroreductase/BluB | Family | |
| IPR029479 | Nitroreductase | Domain | |
| IPR000415 | Nitroreductase-like | Homologous Superfamily |
