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 3LMW | pdb_00003lmw

Crystal structure of iota-carrageenase family GH82 from A. fortis in absence of chloride ions

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyPectin lyase-like 8032422 3001746 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPectin lyase-like 8032422 3001746 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BSdh_cyte3lmwB1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: Sdh_cytECOD (v295.2)
APsaLe3lmwA1 A: alpha arraysX: Retrovirus capsid proteinH: Ubiquitin-relatedT: Ubiquitin-likeF: PsaLECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-likeCATH (4.3.0)
A2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-likeCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Iota-carrageenase, CgiA -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR012334Pectin lyase foldHomologous Superfamily
A, B
IPR024535Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domainDomain
A, B
IPR011050Pectin lyase fold/virulence factorHomologous Superfamily