3LML | pdb_00003lml

Crystal Structure of the sheath tail protein Lin1278 from Listeria innocua, Northeast Structural Genomics Consortium Target LkR115

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Phage_sheath_1N	e3lmlF5	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
F	Phage_sheath_1C	e3lmlF4	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
F	Phage_sheath_1	e3lmlF6	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
E	Phage_sheath_1N	e3lmlE3	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
E	Phage_sheath_1C	e3lmlE1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
E	Phage_sheath_1	e3lmlE2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
D	Phage_sheath_1N	e3lmlD3	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
D	Phage_sheath_1C	e3lmlD1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
D	Phage_sheath_1	e3lmlD2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
C	Phage_sheath_1N	e3lmlC11	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
C	Phage_sheath_1C	e3lmlC10	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
C	Phage_sheath_1	e3lmlC12	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
B	Phage_sheath_1N	e3lmlB11	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
B	Phage_sheath_1C	e3lmlB10	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
B	Phage_sheath_1	e3lmlB12	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
A	Phage_sheath_1N	e3lmlA11	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: Phage_sheath_1N	ECOD (1.6)
A	Phage_sheath_1C	e3lmlA10	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
A	Phage_sheath_1	e3lmlA12	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.2.0)
F	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.2.0)
F	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.2.0)
E	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.2.0)
E	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.2.0)
E	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.2.0)
D	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.2.0)
D	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.2.0)
D	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.2.0)
C	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.2.0)
C	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.2.0)
C	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.2.0)
B	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.2.0)
B	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.2.0)
B	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.2.0)
A	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.2.0)
A	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.2.0)
A	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.2.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR020287	Tail sheath protein, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR054564	Tail sheath protein Gp18-like, domain III N-terminal region	Domain
A, B, C, D, E A, B, C, D, E, F	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR035326	Phage tail sheath protein-like, beta-sandwich domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.