3LC8 | pdb_00003lc8

Crystal structure of the cytoplasmic tail of (pro)renin receptor as a MBP fusion (Maltose-free form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3lc8b_	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like	automated matches	(Escherichia coli ) [TaxId: 562 ], (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3lc8a_	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like	automated matches	(Escherichia coli ) [TaxId: 562 ], (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Type 2 solute binding protein-like	8058187	3000083	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Type 2 solute binding protein-like	8058187	3000083	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	LysR_substrate	e3lc8B2	A: alpha bundles	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: LysR_substrate	ECOD (develop294)
B	EryCIII-like_N	e3lc8B3	A: alpha bundles	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: EryCIII-like_N	ECOD (develop294)
A	LysR_substrate	e3lc8A1	A: alpha bundles	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: LysR_substrate	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
A	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Maltose-binding periplasmic protein, Renin receptor	molecular transducer activity signaling receptor activity transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity oligosaccharide binding binding disaccharide binding carbohydrate binding maltose binding	regulation of systemic arterial blood pressure by renin-angiotensin regulation of systemic arterial blood pressure by hormone multicellular organismal process peptide hormone processing regulation of systemic arterial blood pressure mediated by a chemical signal system process signaling receptor ligand precursor processing protein maturation circulatory system process proteolysis protein metabolic process regulation of biological quality blood circulation regulation of blood pressure regulation of systemic arterial blood pressure by renin-angiotensin regulation of systemic arterial blood pressure by hormone multicellular organismal process peptide hormone processing regulation of systemic arterial blood pressure mediated by a chemical signal system process signaling receptor ligand precursor processing protein maturation circulatory system process proteolysis protein metabolic process regulation of biological quality blood circulation regulation of blood pressure regulation of hormone levels biological regulation regulation of systemic arterial blood pressure by circulatory renin-angiotensin primary metabolic process gene expression macromolecule biosynthetic process hormone metabolic process regulation of systemic arterial blood pressure endocrine process biosynthetic process regulation of angiotensin levels in blood protein processing metabolic process cellular process macromolecule metabolic process angiotensin maturation monoatomic cation transmembrane transport transmembrane transport localization transport proton transmembrane transport monoatomic ion transmembrane transport monoatomic ion transport monoatomic cation transport establishment of localization developmental process anatomical structure morphogenesis head development anatomical structure development head morphogenesis body morphogenesis regulation of transforming growth factor beta production transforming growth factor beta1 production regulation of cellular process positive regulation of biological process regulation of transforming growth factor beta1 production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of transforming growth factor beta1 production transforming growth factor beta production positive regulation of cellular process regulation of biosynthetic process regulation of biological process regulation of macromolecule metabolic process regulation of gene expression positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process positive regulation of transforming growth factor beta production positive regulation of cytokine production regulation of metabolic process cellular response to stimulus regulation of signaling response to stimulus signaling regulation of signal transduction regulation of MAPK cascade intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette MAPK cascade regulation of cell communication signal transduction homeostatic process intracellular pH reduction regulation of intracellular pH vesicle organization cellular component organization organelle organization cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis endosome organization intracellular chemical homeostasis cellular component organization or biogenesis endosomal lumen acidification monoatomic cation homeostasis endomembrane system organization regulation of cellular pH intracellular monoatomic ion homeostasis lysosome organization vacuolar acidification lysosomal lumen acidification regulation of lysosomal lumen pH vacuole organization lytic vacuole organization positive regulation of cell communication positive regulation of signal transduction positive regulation of response to stimulus positive regulation of Wnt signaling pathway Wnt signaling pathway cell surface receptor signaling pathway regulation of Wnt signaling pathway positive regulation of signaling synaptic vesicle maturation cellular localization synaptic vesicle cycle vesicle-mediated transport vesicle-mediated transport in synapse establishment of localization in cell synaptic vesicle lumen acidification developmental maturation neuron cellular homeostasis Golgi lumen acidification epithelium development neural tube development tube development chordate embryonic development anterior/posterior pattern specification pattern specification process nervous system development embryo development tissue development regionalization multicellular organism development embryo development ending in birth or egg hatching rostrocaudal neural tube patterning neural tube patterning system development regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway positive regulation of canonical Wnt signaling pathway central nervous system maturation central nervous system development anatomical structure maturation pigmentation eye pigmentation developmental pigmentation cellular response to stress DNA damage response response to stress cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical cell migration cell motility locomotion carbohydrate transport oligosaccharide transport disaccharide transport maltose transport polysaccharide localization dextrin transport macromolecule localization maltodextrin transmembrane transport polysaccharide transport response to disaccharide response to oxygen-containing compound detection of maltose stimulus detection of stimulus response to carbohydrate detection of chemical stimulus detection of disaccharide stimulus response to maltose detection of carbohydrate stimulus	membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane cell periphery cell surface plasma membrane external side of plasma membrane side of membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle ATPase dependent transmembrane transport complex protein-containing complex ATPase complex membrane protein complex proton-transporting V-type ATPase complex transporter complex proton-transporting two-sector ATPase complex vacuolar membrane catalytic complex vacuole vacuolar proton-transporting V-type ATPase complex cation-transporting ATPase complex transmembrane transporter complex lytic vacuole lysosome coated vesicle membrane clathrin-coated vesicle coated vesicle clathrin-coated vesicle membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane autophagosome membrane autophagosome lytic vacuole membrane lysosomal membrane Golgi membrane Golgi apparatus vacuolar proton-transporting V-type ATPase, V0 domain proton-transporting V-type ATPase, V0 domain proton-transporting two-sector ATPase complex, proton-transporting domain ficolin-1-rich granule membrane ficolin-1-rich granule synapse dendritic spine somatodendritic compartment neuron projection membrane cell junction dendrite membrane dendritic tree cell leading edge neuron spine neuron projection leading edge membrane plasma membrane bounded cell projection dendritic spine membrane synaptic membrane cell projection postsynapse dendrite plasma membrane region cell projection membrane endosome membrane endosome transport vesicle membrane presynapse synaptic vesicle synaptic vesicle membrane transport vesicle exocytic vesicle membrane exocytic vesicle axon plasma membrane protein complex ATP-binding cassette (ABC) transporter complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing maltose transport complex periplasmic space outer membrane-bounded periplasmic space cell envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR056780	Renin receptor-like, C-terminal transmembrane spanning segment	Domain
A, B	IPR012493	Renin receptor-like	Family
A, B	IPR057318	Renin receptor, N-terminal domain	Domain
A, B	IPR006061	Solute-binding family 1, conserved site	Conserved Site
A, B	IPR006060	Maltose/Cyclodextrin ABC transporter, substrate-binding protein	Family
A, B	IPR006059	Bacterial-type extracellular solute-binding protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O75787	syndromic X-linked intellectual disability Hedera type X-linked parkinsonism-spasticity syndrome Parkinson disease intellectual disability Fibrosis malignant mesothelioma osteosarcoma Sjogren syndrome Alzheimer disease cutis laxa Emery-Dreifuss muscular dystrophy facioscapulohumeral muscular dystrophy lung adenocarcinoma myopathy ovarian cancer syndromic X-linked intellectual disability Hedera type X-linked parkinsonism-spasticity syndrome Parkinson disease intellectual disability Fibrosis malignant mesothelioma osteosarcoma Sjogren syndrome Alzheimer disease cutis laxa Emery-Dreifuss muscular dystrophy facioscapulohumeral muscular dystrophy lung adenocarcinoma myopathy ovarian cancer Pick disease amyotrophic lateral sclerosis congenital disorder of glycosylation dermatomyositis epilepsy juvenile dermatomyositis lung cancer neurodegenerative disease pancreatic ductal adenocarcinoma plasma cell myeloma breast cancer Duchenne muscular dystrophy IgA glomerulonephritis large cell medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.