3L88 | pdb_00003l88

Crystal structure of the human Adenovirus type 21 fiber knob

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d3l88l_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
K	d3l88k_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
J	d3l88j_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
I	d3l88i_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
H	d3l88h_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
G	d3l88g_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
F	d3l88f_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
E	d3l88e_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
D	d3l88d_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
C	d3l88c_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
B	d3l88b_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)
A	d3l88a_	All beta proteins	Virus attachment protein globular domain	Virus attachment protein globular domain	automated matches	automated matches	(Human adenovirus 21 ) [TaxId: 32608 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Virus attachment protein globular domain	8071495	3001376	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	RVP	e3l88L1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
K	RVP	e3l88K1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
J	RVP	e3l88J1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
I	RVP	e3l88I1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
H	RVP	e3l88H1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
G	RVP	e3l88G1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
F	RVP	e3l88F1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
E	RVP	e3l88E1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
D	RVP	e3l88D1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
C	RVP	e3l88C1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
B	RVP	e3l88B1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.1)
A	PilZ	e3l88A1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: PilZ	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
K	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
J	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
I	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
H	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
G	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
F	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
E	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
D	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
C	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
B	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)
A	2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Fiber protein	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction cell adhesion cellular process symbiont entry into host cell symbiont entry into host	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009013	Attachment protein shaft domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000978	Adenoviral fibre protein, knob	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008982	Adenovirus pIV-like, attachment domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000931	Adenovirus fibre protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000939	Adenoviral fibre protein, repeat/shaft region	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.