Crystal structure of isoprenoid biosynthesis protein with amidotransferase-like domain from Ehrlichia Chaffeensis at 1.90A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d3l3bb1 | Alpha and beta proteins (a/b) | Flavodoxin-like | Class I glutamine amidotransferase-like | automated matches | automated matches | (Ehrlichia chaffeensis str. Arkansas ) [TaxId: 205920 ], | SCOPe (2.08) |
| B | d3l3bb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Ehrlichia chaffeensis str. Arkansas ) [TaxId: 205920 ], | SCOPe (2.08) |
| A | d3l3ba_ | Alpha and beta proteins (a/b) | Flavodoxin-like | Class I glutamine amidotransferase-like | automated matches | automated matches | (Ehrlichia chaffeensis str. Arkansas ) [TaxId: 205920 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8075840 | 3001405 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | DJ-1/PfpI | 8075839 | 4003749 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Class I glutamine amidotransferase-like | 8075840 | 3001405 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Peptidase_S9, Abhydrolase_4, Hydrolase_4 | e3l3bB1 | A: alpha bundles | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Peptidase_S9, Abhydrolase_4, Hydrolase_4 | ECOD (develop294) |
| A | DJ-1_PfpI | e3l3bA1 | A: alpha bundles | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: DJ-1_PfpI | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.40.50.880 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Class I glutamine amidotransferase (GATase) domain | CATH (4.3.0) |
| A | 3.40.50.880 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Class I glutamine amidotransferase (GATase) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01965 | DJ-1/PfpI family (DJ-1_PfpI) | DJ-1/PfpI family | The family includes the protease PfpI Swiss:Q51732 [1]. This domain is also found in transcriptional regulators such as Swiss:Q9RJG8. | Domain |
