3KP1
Crystal structure of ornithine 4,5 aminomutase (Resting State)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth E] | SCOP2B Superfamily | OraS globular domain-like | 8092026 | 3002551 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2 Family | OAM alpha subunit-like | 8045760 | 4004667 | SCOP2 (2022-06-29) |
D [auth F] | SCOP2 Superfamily | OraS globular domain-like | 8092026 | 3002551 | SCOP2 (2022-06-29) |
F [auth H] | SCOP2B Superfamily | OraS globular domain-like | 8092026 | 3002551 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | OraS globular domain-like | 8092026 | 3002551 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | OAM_dimer_1 | e3kp1A5 | A: a+b two layers | X: Dodecin subunit-like | H: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain (From Topology) | T: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | F: OAM_dimer_1 | ECOD (1.6) |
A | Lys-AminoMut_A_2nd | e3kp1A3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Lys-AminoMut_A_2nd | ECOD (1.6) |
A | B12-binding | e3kp1A1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: B12-binding | ECOD (1.6) |
C [auth B] | OAM_dimer_1 | e3kp1B5 | A: a+b two layers | X: Dodecin subunit-like | H: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain (From Topology) | T: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | F: OAM_dimer_1 | ECOD (1.6) |
C [auth B] | Lys-AminoMut_A_2nd | e3kp1B3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Lys-AminoMut_A_2nd | ECOD (1.6) |
C [auth B] | B12-binding | e3kp1B1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: B12-binding | ECOD (1.6) |
E [auth D] | OAM_dimer_1 | e3kp1D5 | A: a+b two layers | X: Dodecin subunit-like | H: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain (From Topology) | T: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | F: OAM_dimer_1 | ECOD (1.6) |
E [auth D] | Lys-AminoMut_A_2nd | e3kp1D3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Lys-AminoMut_A_2nd | ECOD (1.6) |
E [auth D] | B12-binding | e3kp1D1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: B12-binding | ECOD (1.6) |
G [auth C] | OAM_dimer_1 | e3kp1C5 | A: a+b two layers | X: Dodecin subunit-like | H: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain (From Topology) | T: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | F: OAM_dimer_1 | ECOD (1.6) |
G [auth C] | Lys-AminoMut_A_2nd | e3kp1C3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Lys-AminoMut_A_2nd | ECOD (1.6) |
G [auth C] | B12-binding | e3kp1C1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: B12-binding | ECOD (1.6) |
B [auth E] | OAM_alpha | e3kp1E1 | A: alpha arrays | X: D-ornithine aminomutase S component-related (From Topology) | H: D-ornithine aminomutase S component-related (From Topology) | T: D-ornithine aminomutase S component-related | F: OAM_alpha | ECOD (1.6) |
D [auth F] | OAM_alpha | e3kp1F1 | A: alpha arrays | X: D-ornithine aminomutase S component-related (From Topology) | H: D-ornithine aminomutase S component-related (From Topology) | T: D-ornithine aminomutase S component-related | F: OAM_alpha | ECOD (1.6) |
F [auth H] | OAM_alpha | e3kp1H1 | A: alpha arrays | X: D-ornithine aminomutase S component-related (From Topology) | H: D-ornithine aminomutase S component-related (From Topology) | T: D-ornithine aminomutase S component-related | F: OAM_alpha | ECOD (1.6) |
H [auth G] | OAM_alpha | e3kp1G1 | A: alpha arrays | X: D-ornithine aminomutase S component-related (From Topology) | H: D-ornithine aminomutase S component-related (From Topology) | T: D-ornithine aminomutase S component-related | F: OAM_alpha | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B], E [auth D], G [auth C] | PF09043 | D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit (Lys-AminoMut_A) | D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit | Members of his family are involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as co-factors. The structure is predominantly a PLP-binding TIM ba ... | Domain |
A, C [auth B], E [auth D], G [auth C] | PF16554 | Dimerisation domain of d-ornithine 4,5-aminomutase (OAM_dimer) | Dimerisation domain of d-ornithine 4,5-aminomutase | This family is the short dimerisation domain of the enzyme D-ornithine 4,5-aminomutase. It sits between the TIM-barrel Pfam:PF09043 and Pfam:PF02310. The enzyme is an alpha2-beta2-heterodimer that converts D-ornithine to 2,4-diaminopentanoic acid by ... | Domain |
A, C [auth B], E [auth D], G [auth C] | PF02310 | B12 binding domain (B12-binding) | B12 binding domain | This domain binds to B12 (adenosylcobamide)[1-3], it is found in several enzymes, such as glutamate mutase Swiss:Q05488, methionine synthase Swiss:Q99707 and methylmalonyl-CoA mutase Swiss:P22033. It contains a conserved DxHxxGx(41)SxVx(26)GG motif, ... | Domain |
B [auth E], D [auth F], F [auth H], H [auth G] | PF16552 | D-ornithine 4,5-aminomutase alpha-subunit (OAM_alpha) | D-ornithine 4,5-aminomutase alpha-subunit | OAM_alpha is the 12.8kDa, alpha subunit of d-ornithine 4,5-aminomutase, or OAM, an enzyme that converts d-ornithine to 2,4-diaminopentanoic acid by way of radical propagation from an adenosylcobalamin to a pyridoxal 5'-phosphate cofactor. OAM is an a ... | Domain |