3KM2 | pdb_00003km2

As-isolated TOMATO CHLOROPLAST SUPEROXIDE DISMUTASE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
X	d3km2x_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
W	d3km2w_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
V	d3km2v_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
U	d3km2u_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
T	d3km2t_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
S	d3km2s_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
R	d3km2r_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
Q	d3km2q_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
P	d3km2p_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
O	d3km2o_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
N	d3km2n_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
M	d3km2m_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
L	d3km2l_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
K	d3km2k_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
J	d3km2j_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
I	d3km2i_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
H	d3km2h_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
G	d3km2g_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
F	d3km2f_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
E	d3km2e_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
D	d3km2d_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
C	d3km2c_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
B	d3km2b_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)
A	d3km2a_	All beta proteins	Immunoglobulin-like beta-sandwich	Cu,Zn superoxide dismutase-like	Cu,Zn superoxide dismutase-like	automated matches	tomato (Solanum lycopersicum ) [TaxId: 4081 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cu, Zn superoxide dismutase-like	8062177	3002059	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	FAD_binding_4	e3km2X1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
W	FAD_binding_4	e3km2W1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
V	FAD_binding_4	e3km2V1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
U	FAD_binding_4	e3km2U1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
T	FAD_binding_4	e3km2T1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
S	FAD_binding_4	e3km2S1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
R	FAD_binding_4	e3km2R1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
Q	FAD_binding_4	e3km2Q1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
P	FAD_binding_4	e3km2P1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
O	FAD_binding_4	e3km2O1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
N	FAD_binding_4	e3km2N1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
M	FAD_binding_4	e3km2M1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
L	FAD_binding_4	e3km2L1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
K	FAD_binding_4	e3km2K1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
J	FAD_binding_4	e3km2J1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
I	FAD_binding_4	e3km2I1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
H	FAD_binding_4	e3km2H1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
G	FAD_binding_4	e3km2G1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
F	FAD_binding_4	e3km2F1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
E	FAD_binding_4	e3km2E1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
D	FAD_binding_4	e3km2D1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
C	FAD_binding_4	e3km2C1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
B	FAD_binding_4	e3km2B1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
A	FAD_binding_4	e3km2A1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
W	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
V	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
U	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
T	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
S	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
R	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
Q	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
P	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
O	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
N	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
M	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
L	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
K	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
J	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
I	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
H	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
G	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
F	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
E	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
D	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
C	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
B	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)
A	2.60.40.200	Mainly Beta	Sandwich	Immunoglobulin-like	Superoxide dismutase, copper/zinc binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF00080	Copper/zinc superoxide dismutase (SODC) (Sod_Cu)	Copper/zinc superoxide dismutase (SODC)	superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD ...	superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Superoxide dismutase [Cu-Zn], chloroplastic	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding superoxide dismutase activity oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity catalytic activity	cellular response to stimulus response to stimulus cellular response to oxidative stress detoxification reactive oxygen species metabolic process cellular response to chemical stress response to superoxide cellular oxidant detoxification cellular response to oxygen radical cellular response to reactive oxygen species cellular response to stress response to stress cellular detoxification response to oxygen-containing compound cellular response to stimulus response to stimulus cellular response to oxidative stress detoxification reactive oxygen species metabolic process cellular response to chemical stress response to superoxide cellular oxidant detoxification cellular response to oxygen radical cellular response to reactive oxygen species cellular response to stress response to stress cellular detoxification response to oxygen-containing compound cellular response to oxygen-containing compound response to reactive oxygen species response to toxic substance removal of superoxide radicals superoxide metabolic process response to oxidative stress cellular response to chemical stimulus response to chemical cellular response to superoxide metabolic process cellular process cellular response to toxic substance response to oxygen radical	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR018152	Superoxide dismutase, copper/zinc, binding site	Binding Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR001424	Superoxide dismutase, copper/zinc binding domain	Domain