3KK7 | pdb_00003kk7

Crystal structure of Putative cell invasion protein with MAC/Perforin domain (NP_812351.1) from BACTERIODES THETAIOTAOMICRON VPI-5482 at 2.46 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	MAC/CDC-like	8052035	3002081	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bth-MACPF C-terminal domains	8052088	3002091	SCOP2B (2022-06-29)
A	SCOP2 Family	MACPF-like	8049571	4006548	SCOP2 (2022-06-29)
A	SCOP2 Family	Bth-MACPF C-terminal domains	8052087	4007580	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MAC/CDC-like	8052035	3002081	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bth-MACPF C-terminal domains	8052088	3002091	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Glyco_hydro_30	e3kk7B1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Glyco_hydro_30	ECOD (v294.1)
A	Fic	e3kk7A1	A: a/b three-layered sandwiches	X: Alpha-helical domain in upper collar protein	H: Alpha-helical domain in upper collar protein	T: Alpha-helical domain in upper collar protein	F: Fic	ECOD (v294.1)
A	MACPF_D2	e3kk7A2	A: a/b three-layered sandwiches	X: Preprotein translocase SecE subunit	H: first a+b domain in a putative cell invasion protein	T: first a+b domain in a putative cell invasion protein	F: MACPF_D2	ECOD (v294.1)
A	SecE	e3kk7A3	A: a/b three-layered sandwiches	X: Preprotein translocase SecE subunit	H: Preprotein translocase SecE subunit	T: Preprotein translocase SecE subunit	F: SecE	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.420.400	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	3.30.160.840	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)
A	3.30.420.400	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
A	3.30.160.840	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF20779	MACPF protein, D2 domain (MACPF_D2)	MACPF protein, D2 domain	This domain is found in proteins of the membrane-attack complex/ perforin (MACPF) family from Bacteroidetes. These transmembrane pore- forming proteins are organized into three structured domains: an MACPF domain (Pfam:PF01823) and two C-terminal do ...	This domain is found in proteins of the membrane-attack complex/ perforin (MACPF) family from Bacteroidetes. These transmembrane pore- forming proteins are organized into three structured domains: an MACPF domain (Pfam:PF01823) and two C-terminal domains, D2 and D3. This entry represents the D2 domain, which adopts an alpha/beta fold [1].	Domain
A, B	PF20785	MACPF protein, D3 domain (MACPF_D3)	MACPF protein, D3 domain	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR048468	MACPF protein, D2 domain	Domain
A, B	IPR048467	MACPF protein, D3 domain	Domain
A, B	IPR020864	Membrane attack complex component/perforin (MACPF) domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.