3K6C | pdb_00003k6c

Crystal structure of protein ne0167 from nitrosomonas europaea

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d3k6cj_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
I	d3k6ci_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
H	d3k6ch_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
G	d3k6cg_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
F	d3k6cf_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
E	d3k6ce_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
D	d3k6cd_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
C	d3k6cc_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
B	d3k6cb_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
A	d3k6ca_	All alpha proteins	Ferritin-like	Ferritin-like	half-ferritin	Hypothetical protein NE0167	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Ferritin-like	8036121	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8036121	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8036121	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8036121	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8036121	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8036121	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8036121	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8036121	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8036121	3001658	SCOP2B (2022-06-29)
A	SCOP2 Family	half-ferritin	8023741	4001224	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ferritin-like	8036121	3001658	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Abhydrolase_3	e3k6cJ1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Abhydrolase_3	ECOD (v294.1)
I	Abhydrolase_3	e3k6cI1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Abhydrolase_3	ECOD (v294.1)
H	Abhydrolase_3	e3k6cH1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Abhydrolase_3	ECOD (v294.1)
G	Abhydrolase_3	e3k6cG1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Abhydrolase_3	ECOD (v294.1)
F	Abhydrolase_3	e3k6cF1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Abhydrolase_3	ECOD (v294.1)
E	Abhydrolase_3	e3k6cE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Abhydrolase_3	ECOD (v294.1)
D	Abhydrolase_3	e3k6cD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Abhydrolase_3	ECOD (v294.1)
C	Abhydrolase_3	e3k6cC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Abhydrolase_3	ECOD (v294.1)
B	Abhydrolase_3	e3k6cB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Abhydrolase_3	ECOD (v294.1)
A	PK_Tyr_Ser-Thr	e3k6cA1	A: a/b three-layered sandwiches	X: Cystatin-like	H: NTF2-like	T: NTF2-like	F: PK_Tyr_Ser-Thr	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
I	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
H	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
G	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
F	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
E	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
D	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
C	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
B	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
A	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF22277	EncFtn-like (EncFtn-like)	EncFtn-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Uncharacterized protein NE0167	oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR030907	Encapsulin-associated ferritin-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR054581	Encapsulated ferritin-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.