3JTL | pdb_00003jtl

Crystal structure of archaeal 20S proteasome in complex with mutated P26 activator

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Class II glutamine amidotransferases	8034248	3000131	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Class II glutamine amidotransferases	8034248	3000131	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Class II glutamine amidotransferases	8034248	3000131	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Class II glutamine amidotransferases	8034248	3000131	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Class II glutamine amidotransferases	8034248	3000131	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Class II glutamine amidotransferases	8034248	3000131	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Class II glutamine amidotransferases	8034248	3000131	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Proteasome activator-like	8032475	3001611	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Proteasome activator-like	8032475	3001611	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Proteasome activator-like	8032475	3001611	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Proteasome activator-like	8032475	3001611	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Proteasome activator-like	8032475	3001611	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Proteasome activator-like	8032475	3001611	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Proteasome activator-like	8032475	3001611	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Class II glutamine amidotransferases	8034254	3000131	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Class II glutamine amidotransferases	8034254	3000131	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Class II glutamine amidotransferases	8034254	3000131	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Class II glutamine amidotransferases	8034254	3000131	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Class II glutamine amidotransferases	8034254	3000131	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Class II glutamine amidotransferases	8034254	3000131	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Class II glutamine amidotransferases	8034254	3000131	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	Copper-bind	e3jtlG1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
F	Copper-bind	e3jtlF1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
E	Copper-bind	e3jtlE1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
D	Copper-bind	e3jtlD1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
C	Copper-bind	e3jtlC1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
B	Copper-bind	e3jtlB1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
A	Copper-bind	e3jtlA1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
U	Copper-bind	e3jtlU1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
T	Copper-bind	e3jtlT1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
S	Copper-bind	e3jtlS1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
R	Copper-bind	e3jtlR1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
Q	Copper-bind	e3jtlQ1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
P	Copper-bind	e3jtlP1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
O	Copper-bind	e3jtlO1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
N	Copper-bind	e3jtlN1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
M	Copper-bind	e3jtlM1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
L	Copper-bind	e3jtlL1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
K	Copper-bind	e3jtlK1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
J	Copper-bind	e3jtlJ1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
I	Copper-bind	e3jtlI1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)
H	Copper-bind	e3jtlH1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Copper-bind	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
F	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
E	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
D	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
C	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
B	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
A	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
U	1.20.120.180	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Proteasome activator pa28, C-terminal domain	CATH (4.3.0)
T	1.20.120.180	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Proteasome activator pa28, C-terminal domain	CATH (4.3.0)
S	1.20.120.180	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Proteasome activator pa28, C-terminal domain	CATH (4.3.0)
R	1.20.120.180	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Proteasome activator pa28, C-terminal domain	CATH (4.3.0)
Q	1.20.120.180	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Proteasome activator pa28, C-terminal domain	CATH (4.3.0)
P	1.20.120.180	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Proteasome activator pa28, C-terminal domain	CATH (4.3.0)
O	1.20.120.180	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Proteasome activator pa28, C-terminal domain	CATH (4.3.0)
N	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
M	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
L	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
K	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
J	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
I	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)
H	3.60.20.10	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Aminohydrolase, N-terminal nucleophile (Ntn) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF00227	Proteasome subunit (Proteasome)	Proteasome subunit	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G	PF10584	Proteasome subunit A N-terminal signature (Proteasome_A_N)	Proteasome subunit A N-terminal signature	-	Family
H, I, J, K, L H, I, J, K, L, M, N	PF00227	Proteasome subunit (Proteasome)	Proteasome subunit	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	Proteasome subunit alpha	peptidase activity catalytic activity, acting on a protein threonine-type peptidase activity hydrolase activity catalytic activity endopeptidase activity threonine-type endopeptidase activity	catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process proteasomal protein catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex proteasome core complex, alpha-subunit complex catalytic complex peptidase complex proteasome complex endopeptidase complex proteasome core complex intracellular protein-containing complex
O, P, Q, R, S O, P, Q, R, S, T, U	Proteasome activator protein PA26	-	regulation of biological process regulation of cellular process catabolic process regulation of protein metabolic process biological regulation primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process macromolecule catabolic process regulation of primary metabolic process regulation of proteasomal protein catabolic process metabolic process regulation of biological process regulation of cellular process catabolic process regulation of protein metabolic process biological regulation primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process macromolecule catabolic process regulation of primary metabolic process regulation of proteasomal protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process proteolysis	proteasome accessory complex protein-containing complex intracellular anatomical structure cellular anatomical structure catalytic complex peptidase complex proteasome activator complex proteasome complex endopeptidase complex intracellular protein-containing complex
H, I, J, K, L H, I, J, K, L, M, N	Proteasome subunit beta	peptidase activity catalytic activity, acting on a protein threonine-type peptidase activity hydrolase activity catalytic activity endopeptidase activity threonine-type endopeptidase activity	catabolic process proteasomal protein catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process	protein-containing complex intracellular anatomical structure cellular anatomical structure catalytic complex peptidase complex proteasome complex endopeptidase complex proteasome core complex intracellular protein-containing complex proteasome core complex, beta-subunit complex cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR000426	Proteasome alpha-subunit, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR050115	Proteasome subunit alpha	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR023332	Proteasome alpha-type subunit	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR001353	Proteasome, subunit alpha/beta	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR019982	Proteasome alpha subunit, archaeal	Family
O, P, Q, R, S O, P, Q, R, S, T, U	IPR003186	Proteasome activator PA28, C-terminal domain	Domain
O, P, Q, R, S O, P, Q, R, S, T, U	IPR036252	Proteasome activator superfamily	Homologous Superfamily
O, P, Q, R, S O, P, Q, R, S, T, U	IPR036997	Proteasome activator PA28, C-terminal domain superfamily	Homologous Superfamily
H, I, J, K, L H, I, J, K, L, M, N	IPR016050	Proteasome beta-type subunit, conserved site	Conserved Site
H, I, J, K, L H, I, J, K, L, M, N	IPR023333	Proteasome B-type subunit	Family
H, I, J, K, L H, I, J, K, L, M, N	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
H, I, J, K, L H, I, J, K, L, M, N	IPR019983	Peptidase T1A, proteasome beta-subunit, archaeal	Family
H, I, J, K, L H, I, J, K, L, M, N	IPR001353	Proteasome, subunit alpha/beta	Family
H, I, J, K, L H, I, J, K, L, M, N	IPR000243	Peptidase T1A, proteasome beta-subunit	Family

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Crystal structure of archaeal 20S proteasome in complex with mutated P26 activator

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

3JTL | pdb_00003jtl