3J9Q

Atomic structures of a bactericidal contractile nanotube in its pre- and post-contraction states


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth T]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
B [auth S]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
BA [auth W]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
CA [auth V]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
DA [auth Z]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
EA [auth Y]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
FA [auth e]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
GA [auth b]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
HA [auth k]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
IA [auth h]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
JA [auth n]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
KA [auth c]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
LA [auth i]SCOP2 FamilyTail tube protein-like8046834 4004578 SCOP2 (2022-06-29)
LA [auth i]SCOP2 SuperfamilyT6SS-like8091257 3000580 SCOP2 (2022-06-29)
MA [auth f]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
NA [auth o]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
OA [auth l]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
RA [auth s]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
SA [auth r]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
TA [auth u]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
UA [auth t]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)
Z [auth U]SCOP2B SuperfamilyT6SS-like8091257 3000580 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth T]PF04985e3j9qT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
B [auth S]PF04985e3j9qS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
BA [auth W]PF04985e3j9qW1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
CA [auth V]PF04985e3j9qV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
DA [auth Z]PF04985e3j9qZ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
EA [auth Y]PF04985e3j9qY1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
FA [auth e]PF04985e3j9qe1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
GA [auth b]PF04985e3j9qb1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
HA [auth k]PF04985e3j9qk1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
IA [auth h]PF04985e3j9qh1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
JA [auth n]PF04985e3j9qn1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
KA [auth c]PF04985e3j9qc1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
LA [auth i]PF04985e3j9qi1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
MA [auth f]PF04985e3j9qf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
NA [auth o]PF04985e3j9qo1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
OA [auth l]PF04985e3j9ql1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
PA [auth p]PF04985e3j9qp1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
QA [auth q]PF04985e3j9qq1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
RA [auth s]PF04985e3j9qs1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
SA [auth r]PF04985e3j9qr1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
TA [auth u]PF04985e3j9qu1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
UA [auth t]PF04985e3j9qt1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
VA [auth v]PF04985e3j9qv1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
Z [auth U]PF04985e3j9qU1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
APF17482e3j9qA2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
APF04984,PF22671e3j9qA1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
C [auth B]PF17482e3j9qB2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
C [auth B]PF04984,PF22671e3j9qB1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
D [auth C]PF17482e3j9qC2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
D [auth C]PF04984,PF22671e3j9qC1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
E [auth D]PF17482e3j9qD2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
E [auth D]PF04984,PF22671e3j9qD1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
F [auth E]PF17482e3j9qE2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
F [auth E]PF04984,PF22671e3j9qE1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
G [auth F]PF17482e3j9qF2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
G [auth F]PF04984,PF22671e3j9qF1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
H [auth G]PF17482e3j9qG2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
H [auth G]PF04984,PF22671e3j9qG1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
I [auth K]PF17482e3j9qK2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
I [auth K]PF04984,PF22671e3j9qK1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
J [auth I]PF17482e3j9qI2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
J [auth I]PF04984,PF22671e3j9qI1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
K [auth O]PF17482e3j9qO2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
K [auth O]PF04984,PF22671e3j9qO1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
L [auth M]PF17482e3j9qM2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
L [auth M]PF04984,PF22671e3j9qM1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
M [auth Q]PF17482e3j9qQ2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
M [auth Q]PF04984,PF22671e3j9qQ1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
N [auth H]PF17482e3j9qH2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
N [auth H]PF04984,PF22671e3j9qH1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
O [auth L]PF17482e3j9qL2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
O [auth L]PF04984,PF22671e3j9qL1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
P [auth J]PF17482e3j9qJ2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
P [auth J]PF04984,PF22671e3j9qJ1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
Q [auth P]PF17482e3j9qP2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
Q [auth P]PF04984,PF22671e3j9qP1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
R [auth N]PF17482e3j9qN2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
R [auth N]PF04984,PF22671e3j9qN1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
S [auth R]PF17482e3j9qR2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
S [auth R]PF04984,PF22671e3j9qR1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
T [auth X]PF17482e3j9qX2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
T [auth X]PF04984,PF22671e3j9qX1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
U [auth d]PF17482e3j9qd2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
U [auth d]PF04984,PF22671e3j9qd1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
V [auth a]PF17482e3j9qa2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
V [auth a]PF04984,PF22671e3j9qa1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
W [auth j]PF17482e3j9qj2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
W [auth j]PF04984,PF22671e3j9qj1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
X [auth g]PF17482e3j9qg2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
X [auth g]PF04984,PF22671e3j9qg1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
Y [auth m]PF17482e3j9qm2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
Y [auth m]PF04984,PF22671e3j9qm1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04985Phage tail tube protein FII (Phage_tube)Phage tail tube protein FII- Family
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].Domain
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.Domain