3J7A

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRibosomal S3Ae-like8053207 3002166 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNucleic acid-binding proteins8052749 3000135 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyAlpha-L RNA-binding motif8052748 3001473 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052750 3000334 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyGS N-terminal domain-like8053165 3000408 SCOP2B (2022-06-29)
ISCOP2 FamilyRibosomal protein S78066010 4001112 SCOP2 (2022-06-29)
ISCOP2 SuperfamilyRibosomal protein S78066011 3000799 SCOP2 (2022-06-29)
KSCOP2 FamilyRibosomal protein S88081976 4002027 SCOP2 (2022-06-29)
KSCOP2 SuperfamilyRibosomal protein S88081977 3000709 SCOP2 (2022-06-29)
MSCOP2 FamilyTranslational machinery components8082678 4000951 SCOP2 (2022-06-29)
MSCOP2 SuperfamilyRibosomal protein S5 domain 2-like8082679 3000100 SCOP2 (2022-06-29)
NSCOP2B SuperfamilyRibosomal protein S108100154 3001336 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyWinged helix DNA-binding domain8055711 3000034 SCOP2B (2022-06-29)
RSCOP2 FamilyL30e/L7ae ribosomal proteins8063971 4001513 SCOP2 (2022-06-29)
RSCOP2 SuperfamilyL30e-like8063972 3001739 SCOP2 (2022-06-29)
SSCOP2B SuperfamilyS13-like H2TH domain8100146 3000053 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052571 3000068 SCOP2B (2022-06-29)
USCOP2B SuperfamilyHomeodomain-like8052964 3000001 SCOP2B (2022-06-29)
USCOP2B SuperfamilyS15/NS1 RNA-binding domain8052965 3001284 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyNucleic acid-binding proteins8052726 3000135 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052724 3002138 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053137 3000068 SCOP2B (2022-06-29)
EA [auth 5]SCOP2 FamilyCold shock DNA-binding domain-like8063419 4001909 SCOP2 (2022-06-29)
EA [auth 5]SCOP2 SuperfamilyNucleic acid-binding proteins8063420 3000135 SCOP2 (2022-06-29)
FA [auth 6]SCOP2 FamilyRibosomal protein S30e-like8046410 4005067 SCOP2 (2022-06-29)
FA [auth 6]SCOP2 SuperfamilyRibosomal protein S30e-like8053452 3002190 SCOP2 (2022-06-29)
CA [auth 3]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053146 3000068 SCOP2B (2022-06-29)
CSCOP2 FamilyRibosomal protein S2-like8063815 4003744 SCOP2 (2022-06-29)
CSCOP2 SuperfamilySIS domain/Ribosomal protein S2-like8063816 3001397 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRibosomal_S3Ae_Ne3j7aB2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
BRibosomal_S3Ae_Ce3j7aB1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
DRibosomal_S3_Ce3j7aD2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
DKH_2_3e3j7aD1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
ES4e3j7aE1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
FRibosomal_S4ee3j7aF3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
F40S_S4_Ce3j7aF1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
FRS4NTe3j7aF2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
GRibosomal_S5_C_1e3j7aG2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
GRibosomal_S5_3e3j7aG3 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
GRibosomal_S5_2e3j7aG1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
HRibosomal_S6ee3j7aH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
IRibosomal_S7_1e3j7aI1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
JRibosomal_S7e_Ce3j7aJ2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_CECOD (1.6)
JRibosomal_S7e_Ne3j7aJ1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
KRibosomal_S8_N_1e3j7aK1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
KRibosomal_S8_C_1e3j7aK2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
LRibosomal_S8ee3j7aL1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
MRibosomal_S9e3j7aM1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
NRibosomal_S10_1e3j7aN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
OS10_plectine3j7aO1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
PRibosomal_S11e3j7aP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
QRibosom_S12_S23e3j7aQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
RRibosomal_L7Aee3j7aR1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
SRibosomal_S13e3j7aS1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
TRibosomal_S14_2e3j7aT1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
URibosomal_S13_N_1e3j7aU2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_N_1ECOD (1.6)
URibosomal_S15_2e3j7aU1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
VRibosomal_S17_1e3j7aV1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
YRibosomal_S19ee3j7aY1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
ZRibosomal_S21ee3j7aZ1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
BA [auth 2]Ribosomal_S25e3j7a21 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
DA [auth 4]Ribosomal_S27ee3j7a41 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
EA [auth 5]Ribosomal_S28ee3j7a51 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
FA [auth 6]Ribosomal_S30e3j7a61 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
WRibosomal_S17ee3j7aW1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
XRibosomal_S19e3j7aX1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
AA [auth 1]Ribosomal_S24ee3j7a11 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
CA [auth 3]Ribosomal_S26ee3j7a31 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
CRibosomal_S2_2e3j7aC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.1140.32 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain Ribosomal protein S3, C-terminal domainCATH (4.3.0)
F3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region Chain ACATH (4.3.0)
F2.40.50.740 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Ribosomal protein S4, central domainCATH (4.3.0)
F2.30.30.30 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
G3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
G3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
H1.20.5.2650 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
I1.10.455.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal protein S7/S5CATH (4.3.0)
K3.30.1370.30 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)
K3.30.1490.10 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1CATH (4.3.0)
M3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
N3.30.70.600 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Ribosomal protein S10CATH (4.3.0)
O1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
P3.30.420.80 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
R3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
S1.10.8.50 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
T4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14 Chain NCATH (4.3.0)
U1.10.287.10 Mainly Alpha Orthogonal Bundle Helix Hairpins S15/NS1, RNA-bindingCATH (4.3.0)
V2.40.50.1000 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) CATH (4.3.0)
Y1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)
Z3.30.1230.20 Alpha Beta 2-Layer Sandwich Hypothetical Cytosolic Protein Chain: ACATH (4.3.0)
DA [auth 4]2.20.25.100 Mainly Beta Single Sheet N-terminal domain of TfIIb Ribosomal protein S27CATH (4.3.0)
EA [auth 5]2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (4.3.0)
W1.10.60.20 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor domain 2CATH (4.3.0)
X3.30.860.10 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19 Chain ACATH (4.3.0)
AA [auth 1]3.30.70.3370 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
CA [auth 3]3.30.1740.20 Alpha Beta 2-Layer Sandwich first zn-finger domain of poly(adp-ribose) polymerase-1 Ribosomal protein S26CATH (4.3.0)
C3.40.50.10490 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glucose-6-phosphate isomerase like proteinCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
PF07650KH domain (KH_2)KH domain- Domain
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
PF00467KOW motif (KOW)KOW motif- Family
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
BA [auth 2]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
DA [auth 4]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
EA [auth 5]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
FA [auth 6]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
AA [auth 1]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
CA [auth 3]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
18S ribosomal RNA---
40S ribosomal protein eS1
40S ribosomal protein uS3
40S ribosomal protein uS4
40S ribosomal protein eS4
40S ribosomal protein uS5
40S ribosomal protein eS6
40S ribosomal protein uS7
40S ribosomal protein eS7
40S ribosomal protein uS8
40S ribosomal protein eS8
40S ribosomal protein uS9
40S ribosomal protein uS10
40S ribosomal protein eS10
40S ribosomal protein uS11---
40S ribosomal protein uS12
40S ribosomal protein eS12
40S ribosomal protein uS13
40S ribosomal protein uS14
40S ribosomal protein uS15
40S ribosomal protein uS17
40S ribosomal protein eS19
40S ribosomal protein eS21
BA [auth 2]40S ribosomal protein eS25
DA [auth 4]40S ribosomal protein eS27
EA [auth 5]40S ribosomal protein eS28
FA [auth 6]40S ribosomal protein eS30
GA [auth 7]tRNA---
40S ribosomal protein eS17
40S ribosomal protein uS19
AA [auth 1]40S ribosomal protein eS24
CA [auth 3]40S ribosomal protein eS26
40S ribosomal protein uS2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001593Small ribosomal subunit protein eS1Family
IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
IPR004044K Homology domain, type 2Domain
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR002942RNA-binding S4 domainDomain
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR022801Small ribosomal subunit protein uS4Family
IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
IPR013845Small ribosomal subunit protein eS4, central regionDomain
IPR000876Small ribosomal subunit protein eS4Family
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR005824KOWDomain
IPR000851Small ribosomal subunit protein uS5Family
IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR001377Small ribosomal subunit protein eS6Family
IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
IPR000235Small ribosomal subunit protein uS7Family
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
IPR000554Small ribosomal subunit protein eS7Family
IPR000630Small ribosomal subunit protein uS8Family
IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
IPR001047Small ribosomal subunit protein eS8Family
IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR001848Small ribosomal subunit protein uS10Family
IPR027486Small ribosomal subunit protein uS10 domainDomain
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
IPR037447Small ribosomal subunit protein eS10Family
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR005326Plectin/eS10, N-terminalDomain
IPR006032Small ribosomal subunit protein uS12Family
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
IPR000530Small ribosomal subunit protein eS12Family
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
IPR001892Small ribosomal subunit protein uS13Family
IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
IPR001209Small ribosomal subunit protein uS14Family
IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
IPR000589Small ribosomal subunit protein uS15Family
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000266Small ribosomal subunit protein uS17Family
IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
IPR001266Small ribosomal subunit protein eS19Family
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
IPR001931Small ribosomal subunit protein eS21Family
BA [auth 2]IPR004977Small ribosomal subunit protein eS25Family
DA [auth 4]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
DA [auth 4]IPR000592Small ribosomal subunit protein eS27Family
DA [auth 4]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth 5]IPR028626Ribosomal protein eS28 conserved siteConserved Site
EA [auth 5]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth 5]IPR000289Small ribosomal subunit protein eS28Family
FA [auth 6]IPR006846Small ribosomal subunit protein eS30Family
IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
IPR001210Small ribosomal subunit protein eS17Family
IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
IPR002222Small ribosomal subunit protein uS19Family
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
AA [auth 1]IPR001976Small ribosomal subunit protein eS24Family
AA [auth 1]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
AA [auth 1]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
CA [auth 3]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
CA [auth 3]IPR000892Small ribosomal subunit protein eS26Family
CA [auth 3]IPR047864Ribosomal protein eS26, conserved siteConserved Site
IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily