3ILA | pdb_00003ila

Crystal structure of rabbit ryanodine receptor 1 N-terminal domain (9-205)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3ilaa_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	N-terminal domain of ryanodine receptor type 1	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
B	d3ilab_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	N-terminal domain of ryanodine receptor type 1	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
C	d3ilac_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	N-terminal domain of ryanodine receptor type 1	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
D	d3ilad_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	N-terminal domain of ryanodine receptor type 1	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
F	d3ilaf_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	N-terminal domain of ryanodine receptor type 1	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
G	d3ilag_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	N-terminal domain of ryanodine receptor type 1	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
H	d3ilah_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	N-terminal domain of ryanodine receptor type 1	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
E	d3ilae_	All beta proteins	beta-Trefoil	MIR domain	Ryanodine receptor N-terminal-like	N-terminal domain of ryanodine receptor type 1	European rabbit,Japanese white rabbit,domestic rabbit,rabbits (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	V-set	e3ilaA2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: V-set	ECOD (v294.1)
B	POTRA	e3ilaB1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
C	POTRA	e3ilaC1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
D	POTRA	e3ilaD1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
F	LHC	e3ilaF1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: HTH	T: winged helix domain	F: LHC	ECOD (v294.1)
G	POTRA	e3ilaG1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
H	POTRA	e3ilaH1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
I	Trypsin_2	e3ilaI2	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Trypsin_2	ECOD (v294.1)
E	POTRA	e3ilaE1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
A	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
B	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
C	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
D	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
F	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
G	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
H	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
E	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I	Ryanodine receptor 1	calcium channel activity monoatomic cation transmembrane transporter activity intracellularly ligand-gated monoatomic ion channel activity gated channel activity monoatomic ion channel activity intracellularly gated calcium channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity ligand-gated calcium channel activity monoatomic ion transmembrane transporter activity transporter activity calcium channel activity monoatomic cation transmembrane transporter activity intracellularly ligand-gated monoatomic ion channel activity gated channel activity monoatomic ion channel activity intracellularly gated calcium channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity ligand-gated calcium channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity ligand-gated monoatomic cation channel activity transmembrane transporter activity binding toxic substance binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding calcium-induced calcium release activity ryanodine-sensitive calcium-release channel activity protein binding calmodulin binding identical protein binding cation binding calcium ion binding metal ion binding ATP-gated ion channel activity voltage-gated calcium channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity transmembrane transporter binding disordered domain specific binding protein domain specific binding	multicellular organismal process system process muscle contraction muscle system process striated muscle contraction cellular response to nitrogen compound cellular response to stimulus response to stimulus cellular response to caffeine response to nitrogen compound response to purine-containing compound response to alkaloid cellular response to chemical stimulus response to chemical multicellular organismal process system process muscle contraction muscle system process striated muscle contraction cellular response to nitrogen compound cellular response to stimulus response to stimulus cellular response to caffeine response to nitrogen compound response to purine-containing compound response to alkaloid cellular response to chemical stimulus response to chemical cellular process cellular response to alkaloid cellular response to purine-containing compound response to caffeine inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular response to metal ion response to metal ion cellular response to calcium ion response to calcium ion transport monoatomic ion transmembrane transport establishment of localization calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport localization monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport developmental process myotube cell development skeletal muscle fiber development cellular developmental process skeletal muscle tissue development animal organ development cell development tissue development muscle cell differentiation myotube differentiation striated muscle tissue development muscle structure development skeletal muscle organ development striated muscle cell development muscle cell development cell differentiation anatomical structure development muscle tissue development muscle organ development striated muscle cell differentiation skin development protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis bone maturation developmental maturation multicellular organism development skeletal system development ossification anatomical structure maturation ossification involved in bone maturation animal organ maturation bone development system development calcium ion transmembrane import into cytosol release of sequestered calcium ion into cytosol release of sequestered calcium ion into cytosol by endoplasmic reticulum sarcoplasmic reticulum calcium ion transport release of sequestered calcium ion into cytosol by sarcoplasmic reticulum heart development heart morphogenesis circulatory system development anatomical structure morphogenesis outflow tract morphogenesis animal organ morphogenesis	membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system sarcoplasm intracellular organelle endoplasmic reticulum subcompartment terminal cisterna cellular anatomical structure organelle endoplasmic reticulum sarcoplasmic reticulum cytoplasm membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system sarcoplasm intracellular organelle endoplasmic reticulum subcompartment terminal cisterna cellular anatomical structure organelle endoplasmic reticulum sarcoplasmic reticulum cytoplasm membrane intracellular membraneless organelle Z disc sarcomere I band membraneless organelle contractile muscle fiber supramolecular fiber myofibril supramolecular polymer supramolecular complex cell periphery sarcolemma plasma membrane smooth endoplasmic reticulum organelle membrane bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network sarcoplasmic reticulum membrane endoplasmic reticulum membrane protein-containing complex membrane protein complex ryanodine receptor complex transporter complex endoplasmic reticulum protein-containing complex plasma membrane protein complex voltage-gated calcium channel complex cation channel complex transmembrane transporter complex calcium channel complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR036300	Mir domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR000699	RIH domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR013662	RyR/IP3R Homology associated domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR016093	MIR motif	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR003877	SPRY domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR001870	B30.2/SPRY domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR009460	Ryanodine Receptor TM 4-6	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR015925	Ryanodine/Inositol 1,4,5-trisphosphate receptor	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR048581	Ryanodine receptor, junctional solenoid domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR035910	RyR/IP3 receptor binding core, RIH domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR003032	Ryanodine receptor Ryr	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR035761	Ryanodine receptor, SPRY domain 1	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR014821	Inositol 1,4,5-trisphosphate/ryanodine receptor	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR035764	Ryanodine receptor, SPRY domain 2	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR013333	Ryanodine receptor	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR043136	B30.2/SPRY domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR011992	EF-hand domain pair	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR005821	Ion transport domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR035762	Ryanodine receptor, SPRY domain 3	Domain