3HW2 | pdb_00003hw2

Crystal structure of the SifA-SKIP(PH) complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	SifA virulence factor-like	8048741	4006197	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SopE-like GEF domain	8092766	3001205	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e3hw2B1	A: Cystatin-like	X: NTF2-like	H: NTF2-like	T: RbsD_FucU	F:	ECOD (20:10:01)
A		e3hw2A1	A: beta-hairpin stack	X: beta-hairpin stack	H: beta-hairpin stack	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
A	3.30.2440.10	Alpha Beta	2-Layer Sandwich	Secreted effector protein SifA fold	Secreted effector protein SifA	CATH (4.3.0)
A	3.30.390.70	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	1.10.1740.30	Mainly Alpha	Orthogonal Bundle	Rna Polymerase Sigma Factor	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF00169	PH domain (PH)	PH domain	PH stands for pleckstrin homology.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Pleckstrin homology domain-containing family M member 2	cytoskeletal protein binding protein binding binding kinesin binding	lymphocyte mediated immunity biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus leukocyte mediated cytotoxicity response to biotic stimulus immune effector process immune system process defense response to other organism response to stress natural killer cell mediated cytotoxicity lymphocyte mediated immunity biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus leukocyte mediated cytotoxicity response to biotic stimulus immune effector process immune system process defense response to other organism response to stress natural killer cell mediated cytotoxicity innate immune response leukocyte mediated immunity cellular process response to external biotic stimulus natural killer cell mediated immunity cell killing regulation of localization localization regulation of biological process regulation of protein localization macromolecule localization biological regulation intracellular protein localization organelle localization lysosome localization vacuolar localization cellular component organization organelle organization cellular component organization or biogenesis Golgi organization endomembrane system organization	vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm organelle membrane lysosome endosome membrane endosome intracellular vesicle endomembrane system cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle vesicle
A	Protein sifA	-	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host microtubule cytoskeleton symbiont-mediated perturbation of host cytoskeleton disruption of anatomical structure in another organism symbiont-mediated disruption of host cellular anatomical structure cellular response to stimulus symbiont-mediated perturbation of host cellular process regulation of cellular process small GTPase-mediated signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction regulation of signal transduction symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host microtubule cytoskeleton symbiont-mediated perturbation of host cytoskeleton disruption of anatomical structure in another organism symbiont-mediated disruption of host cellular anatomical structure cellular response to stimulus symbiont-mediated perturbation of host cellular process regulation of cellular process small GTPase-mediated signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction regulation of signal transduction intracellular signal transduction biological process involved in symbiotic interaction cell communication symbiont-mediated perturbation of host process regulation of intracellular signal transduction intracellular signaling cassette signal transduction symbiont-mediated perturbation of host signal transduction pathway symbiont-mediated perturbation of host Rab small GTPase signal transduction modulation of process of another organism regulation of biological process regulation of signaling symbiont-mediated perturbation of host small GTPase-mediated signal transduction biological regulation biological process involved in interaction with host regulation of response to stimulus regulation of cell communication cellular process	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part extracellular region host intracellular part host cell cytoplasm host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR037213	RUN domain superfamily	Homologous Superfamily
B	IPR004012	RUN domain	Domain
B	IPR001849	Pleckstrin homology domain	Domain
B	IPR057288	PLEKHM2, PH domain-like	Domain
B	IPR053015	Pleckstrin homology domain-containing protein M2	Family
B	IPR047327	PLEKHM2, RUN domain	Domain
B	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR010637	Sif	Family
A	IPR044928	Secreted effector protein SifA, C-terminal domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q8IWE5	alcoholic pancreatitis malignant ependymoma large cell medulloblastoma medulloblastoma left ventricular noncompaction psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.