3HE7 | pdb_00003he7

Crystal structure of mouse CD1d-alpha-galactosylceramide with mouse Valpha14-Vbeta7 NKT TCR


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054547 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054657 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8037146 3000521 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRibosomal_L36e3he7B1 A: alpha bundlesX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: Ribosomal_L36ECOD (develop294)
DV-sete3he7D3 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (develop294)
CC1-sete3he7C3 A: alpha bundlesX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: C1-setECOD (develop294)
AV-sete3he7A3 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
CD1D1 B2M Mus musculus (house mouse) B2M*01 C-LIKE-DOMAIN C-LIKE RPI-MH1Like MH1LIKE-ALPHA-LIKE_B2M IMGT (202610-0)
TR TRAV11*02-TRAJ18*01, TRBV29*01 TR-BETA-2 Chimeric (chimeric) TRBV29*01, TRBJ2-5*01, TRBC2*01, TRBC2*02 V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 TR TR-ALPHA_BETA-2 IMGT (202610-0)
TR TRAV11*02-TRAJ18*01, TRBV29*01 TR-ALPHA Chimeric (chimeric) TRAV11*02, TRAJ18*01, TRAC*01 V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA TR TR-ALPHA_BETA-2 IMGT (202610-0)
CD1D1 I-ALPHA-LIKE Mus musculus (house mouse) - - RPI-MH1Like MH1LIKE-ALPHA-LIKE_B2M IMGT (202610-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF09291Domain of unknown function (DUF1968) (DUF1968)Domain of unknown function (DUF1968)Members of this family are found in mammalian T-cell antigen receptor, and adopt an immunoglobulin-like beta-sandwich fold, with seven strands in two beta-sheets in a Greek-key topology. Their exact function has not, as yet, been determined. Domain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Beta-2-microglobulin
Vbeta7(mouse variable domain, human constant domain)---
Valpha14(mouse variable domain, human constant domain)-
Antigen-presenting glycoprotein CD1d1