3HDJ | pdb_00003hdj

The crystal structure of probable ornithine cyclodeaminase from Bordetella pertussis Tohama I

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Ornithine cyclodeaminase-like	8063740	3000041	SCOP2B (2022-06-29)
A	SCOP2 Family	Ornithine cyclodeaminase-like	8063739	4000025	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ornithine cyclodeaminase-like	8063740	3000041	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	OCD_Mu_crystall_N	e3hdjB2	A: a+b two layers	X: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology)	H: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology)	T: Ornithine cyclodeaminase-like enzymes dimerization domain	F: OCD_Mu_crystall_N	ECOD (1.6)
B	OCD_Mu_crystall_C	e3hdjB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: OCD_Mu_crystall_C	ECOD (1.6)
A	OCD_Mu_crystall_N	e3hdjA2	A: a+b two layers	X: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology)	H: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology)	T: Ornithine cyclodeaminase-like enzymes dimerization domain	F: OCD_Mu_crystall_N	ECOD (1.6)
A	OCD_Mu_crystall_C	e3hdjA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: OCD_Mu_crystall_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1780.10	Alpha Beta	2-Layer Sandwich	ornithine cyclodeaminase, domain 1	ornithine cyclodeaminase, domain 1	CATH (4.2.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.2.0)
A	3.30.1780.10	Alpha Beta	2-Layer Sandwich	ornithine cyclodeaminase, domain 1	ornithine cyclodeaminase, domain 1	CATH (4.2.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02423	Ornithine cyclodeaminase/mu-crystallin family (OCD_Mu_crystall)	Ornithine cyclodeaminase/mu-crystallin family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Probable ornithine cyclodeaminase	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B	IPR003462	Ornithine cyclodeaminase/mu-crystallin	Family
A, B	IPR023401	Ornithine cyclodeaminase, N-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.