3H6E | pdb_00003h6e

The crystal structure of a carbohydrate kinase from Novosphingobium aromaticivorans

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SBDS	e3h6eB2	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: SBDS	ECOD (develop294)
B	Metallophos	e3h6eB1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Metallophos	ECOD (develop294)
A	NTP_transf_3	e3h6eA2	A: alpha bundles	X: Alpha-beta plaits	H: Nucleotide-diphospho-sugar transferases	T: Nucleotide-diphospho-sugar transferases	F: NTP_transf_3	ECOD (develop294)
A	Gtf3_C	e3h6eA1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Gtf3_C	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
A	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00370	FGGY family of carbohydrate kinases, N-terminal domain (FGGY_N)	FGGY family of carbohydrate kinases, N-terminal domain	This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain.	Domain
A, B	PF21546	Carbohydrate kinase FGGY, C-terminal domain (FGGY_C_2)	Carbohydrate kinase FGGY, C-terminal domain	This domain is found at the C-terminal end of Carbohydrate kinase, FGGY from Novosphingobium aromaticivorans and similar bacterial proteins. This protein may catalyse the transfer of a phosphate group from ATP to their carbohydrate substrates. It con ...	This domain is found at the C-terminal end of Carbohydrate kinase, FGGY from Novosphingobium aromaticivorans and similar bacterial proteins. This protein may catalyse the transfer of a phosphate group from ATP to their carbohydrate substrates. It contain two large domains, which are separated by a deep cleft. This domain, thought to be responsible for ATP binding, shows an alpha-beta configuration.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Carbohydrate kinase, FGGY	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B	IPR018484	Carbohydrate kinase FGGY, N-terminal	Domain
A, B	IPR050406	FGGY Carbohydrate Kinase	Family
A, B	IPR049382	Carbohydrate kinase FGGY, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.