3H3Y

Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 star-shaped baseplate

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF21472	e3h3yA1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
A	PF21387	e3h3yA3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
A	PF21871	e3h3yA2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
B	PF21472	e3h3yB1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
B	PF21387	e3h3yB3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
B	PF21871	e3h3yB2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
C	PF21472	e3h3yC1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
C	PF21387	e3h3yC3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
C	PF21871	e3h3yC2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
D	PF21472	e3h3yD1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
D	PF21387	e3h3yD3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
D	PF21871	e3h3yD2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
E	PF21472	e3h3yE1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
E	PF21387	e3h3yE3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
E	PF21871	e3h3yE2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
F	PF21472	e3h3yF1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
F	PF21387	e3h3yF3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
F	PF21871	e3h3yF2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
H	PF21472	e3h3yH1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
H	PF21387	e3h3yH3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
H	PF21871	e3h3yH2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
I	PF21472	e3h3yI1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
I	PF21387	e3h3yI3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
I	PF21871	e3h3yI2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
J	PF21472	e3h3yJ1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
J	PF21387	e3h3yJ3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
J	PF21871	e3h3yJ2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
L	PF21472	e3h3yL1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
L	PF21387	e3h3yL3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
L	PF21871	e3h3yL2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
G	PF21472	e3h3yG1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
G	PF21387	e3h3yG3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
G	PF21871	e3h3yG2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)
K	PF21472	e3h3yK1	A: beta sandwiches	X: Baseplate structural protein gp6 C-terminal domain II (From Topology)	H: Baseplate structural protein gp6 C-terminal domain II (From Topology)	T: Baseplate structural protein gp6 C-terminal domain II	F: PF21472	ECOD (1.6)
K	PF21387	e3h3yK3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Baseplate structural protein gp6 C-terminal domain I (From Topology)	T: Baseplate structural protein gp6 C-terminal domain I	F: PF21387	ECOD (1.6)
K	PF21871	e3h3yK2	A: a+b two layers	X: Baseplate structural protein gp6 C-terminal domain III (From Topology)	H: Baseplate structural protein gp6 C-terminal domain III (From Topology)	T: Baseplate structural protein gp6 C-terminal domain III	F: PF21871	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF21387	Baseplate structural protein gp6, C-terminal domain I (Gp6_C-I)	Baseplate structural protein gp6, C-terminal domain I	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This do ...	Baseplate structural protein gp6 is located next to the tail tube and is an intermediate (or inner) baseplate protein involved in tail assembly. Two molecules of gp6 form a complex with gp25 and gp7 which is involved sheath contraction [1-3]. This domain has been described as C-terminal domain I, and adopts a 2-layer beta-sandwich fold.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF21472	Baseplate structural protein gp6, C-terminal domain II (gp6_C-domII)	Baseplate structural protein gp6, C-terminal domain II	This entry represents domain II found in the C-terminal of gp6 from bacteriophage T4, which adopts a beta-barrel fold. This protein is involved in tail assembly. It forms the gp25-(gp6)2-gp7 module, involved in sheath contraction [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Baseplate structural protein Gp6	identical protein binding protein binding binding	virion assembly viral tail assembly viral process viral life cycle	virus tail virion component virus tail, baseplate

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR034698	Baseplate wedge protein gp6	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049029	Baseplate wedge protein gp6, domain II	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049027	Baseplate structural protein gp6, C-terminal domain I	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049026	Baseplate wedge protein gp6-like, N-terminal helical domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR049028	Baseplate structural protein gp6, C-terminal domain II	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

Prepare Data

Validate Data

Deposit Data

Help and Resources

3H3Y

Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 star-shaped baseplate

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage