3GS9 | pdb_00003gs9

Crystal structure of prophage tail protein gp18 (NP_465809.1) from Listeria monocytogenes EGD-e at 1.70 A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Prophage_tail	e3gs9A4	A: a/b three-layered sandwiches	X: C-terminal insertion domain in phage tail proteins	H: C-terminal insertion domain in phage tail proteins	T: C-terminal insertion domain in phage tail proteins	F: Prophage_tail	ECOD (v294.1)
A	Prophage_tailD1	e3gs9A1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Prophage_tailD1	ECOD (v294.1)
A	PF26674	e3gs9A2	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: PF26674	ECOD (v294.1)
A	Ketoacyl-synt_C,KAsynt_C_assoc	e3gs9A3	A: a/b three-layered sandwiches	X: Thiolase-like	H: Thiolase-like	T: Thiolase-like	F: Ketoacyl-synt_C,KAsynt_C_assoc	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	6.20.110.10	Special	Other non-globular	Thrombin, subunit H		CATH (4.3.0)
A	3.55.50.40	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF18994	Prophage endopeptidase tail N-terminal domain (Prophage_tailD1)	Prophage endopeptidase tail N-terminal domain	This domain represents the N-terminal domain of prophage tail proteins that are probably acting as endopeptidases. This domain has a RIFT related fold.	Domain
A	PF06605	Prophage endopeptidase tail (Prophage_tail)	Prophage endopeptidase tail	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR044051	Prophage endopeptidase tail, N-terminal	Domain
A	IPR010572	Tail spike domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084
A	MSE	Parent Component: MET RESID: AA0075
A	OCS	Parent Component: CYS RESID: AA0075 , AA0556 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084 , L-cysteic acid (L-cysteine sulfonic acid) MOD:00460

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.