3GRK | pdb_00003grk

Crystal structure of short chain dehydrogenase reductase SDR glucose-ribitol dehydrogenase from Brucella melitensis

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Short-chain dehydrogenases/reductases, SDR	8063125	4000029	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SDR-like	8063126	3000038	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8063126	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8063126	3000038	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SDR-like	8063126	3000038	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SDR-like	8063126	3000038	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SDR-like	8063126	3000038	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	SDR-like	8063126	3000038	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	SDR-like	8063126	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF1968	e3grkA1	A: alpha bundles	X: TAZ domain	H: EF-hand-related	T: EF-hand	F: DUF1968	ECOD (develop294)
B	RdRP_3	e3grkB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (develop294)
C	RdRP_3	e3grkC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (develop294)
D	RdRP_3	e3grkD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (develop294)
E	RdRP_3	e3grkE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (develop294)
F	RdRP_3	e3grkF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (develop294)
G	RdRP_3	e3grkG1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (develop294)
H	RdRP_3	e3grkH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
F	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
H	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Enoyl-(acyl-carrier-protein) reductase (NADH)	enoyl-[acyl-carrier-protein] reductase (NADH) activity oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor enoyl-[acyl-carrier-protein] reductase [NAD(P)H] activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002347	Short-chain dehydrogenase/reductase SDR	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR014358	Enoyl-[acyl-carrier-protein] reductase (NADH)	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.