3GIT | pdb_00003git

Crystal structure of a truncated acetyl-CoA synthase

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	CdhC	e3gitF1	A: a+b complex topology	X: first a+b domain in acetyl-CoA synthase (From Topology)	H: first a+b domain in acetyl-CoA synthase (From Topology)	T: first a+b domain in acetyl-CoA synthase	F: CdhC	ECOD (1.6)
F	PRK09529_2nd	e3gitF2	A: a+b complex topology	X: second a+b domain in acetyl-CoA synthase (From Topology)	H: second a+b domain in acetyl-CoA synthase (From Topology)	T: second a+b domain in acetyl-CoA synthase	F: PRK09529_2nd	ECOD (1.6)
F	PRK09529_1st	e3gitF3	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins (From Topology)	H: Fe-binding domain in prismane-like proteins (From Topology)	T: Fe-binding domain in prismane-like proteins	F: PRK09529_1st	ECOD (1.6)
E	CdhC	e3gitE1	A: a+b complex topology	X: first a+b domain in acetyl-CoA synthase (From Topology)	H: first a+b domain in acetyl-CoA synthase (From Topology)	T: first a+b domain in acetyl-CoA synthase	F: CdhC	ECOD (1.6)
E	PRK09529_2nd	e3gitE2	A: a+b complex topology	X: second a+b domain in acetyl-CoA synthase (From Topology)	H: second a+b domain in acetyl-CoA synthase (From Topology)	T: second a+b domain in acetyl-CoA synthase	F: PRK09529_2nd	ECOD (1.6)
E	PRK09529_1st	e3gitE3	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins (From Topology)	H: Fe-binding domain in prismane-like proteins (From Topology)	T: Fe-binding domain in prismane-like proteins	F: PRK09529_1st	ECOD (1.6)
D	CdhC	e3gitD1	A: a+b complex topology	X: first a+b domain in acetyl-CoA synthase (From Topology)	H: first a+b domain in acetyl-CoA synthase (From Topology)	T: first a+b domain in acetyl-CoA synthase	F: CdhC	ECOD (1.6)
D	PRK09529_2nd	e3gitD2	A: a+b complex topology	X: second a+b domain in acetyl-CoA synthase (From Topology)	H: second a+b domain in acetyl-CoA synthase (From Topology)	T: second a+b domain in acetyl-CoA synthase	F: PRK09529_2nd	ECOD (1.6)
D	PRK09529_1st	e3gitD3	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins (From Topology)	H: Fe-binding domain in prismane-like proteins (From Topology)	T: Fe-binding domain in prismane-like proteins	F: PRK09529_1st	ECOD (1.6)
C	CdhC	e3gitC1	A: a+b complex topology	X: first a+b domain in acetyl-CoA synthase (From Topology)	H: first a+b domain in acetyl-CoA synthase (From Topology)	T: first a+b domain in acetyl-CoA synthase	F: CdhC	ECOD (1.6)
C	PRK09529_2nd	e3gitC2	A: a+b complex topology	X: second a+b domain in acetyl-CoA synthase (From Topology)	H: second a+b domain in acetyl-CoA synthase (From Topology)	T: second a+b domain in acetyl-CoA synthase	F: PRK09529_2nd	ECOD (1.6)
C	PRK09529_1st	e3gitC3	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins (From Topology)	H: Fe-binding domain in prismane-like proteins (From Topology)	T: Fe-binding domain in prismane-like proteins	F: PRK09529_1st	ECOD (1.6)
B	CdhC	e3gitB1	A: a+b complex topology	X: first a+b domain in acetyl-CoA synthase (From Topology)	H: first a+b domain in acetyl-CoA synthase (From Topology)	T: first a+b domain in acetyl-CoA synthase	F: CdhC	ECOD (1.6)
B	PRK09529_2nd	e3gitB2	A: a+b complex topology	X: second a+b domain in acetyl-CoA synthase (From Topology)	H: second a+b domain in acetyl-CoA synthase (From Topology)	T: second a+b domain in acetyl-CoA synthase	F: PRK09529_2nd	ECOD (1.6)
B	PRK09529_1st	e3gitB3	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins (From Topology)	H: Fe-binding domain in prismane-like proteins (From Topology)	T: Fe-binding domain in prismane-like proteins	F: PRK09529_1st	ECOD (1.6)
A	CdhC	e3gitA1	A: a+b complex topology	X: first a+b domain in acetyl-CoA synthase (From Topology)	H: first a+b domain in acetyl-CoA synthase (From Topology)	T: first a+b domain in acetyl-CoA synthase	F: CdhC	ECOD (1.6)
A	PRK09529_2nd	e3gitA2	A: a+b complex topology	X: second a+b domain in acetyl-CoA synthase (From Topology)	H: second a+b domain in acetyl-CoA synthase (From Topology)	T: second a+b domain in acetyl-CoA synthase	F: PRK09529_2nd	ECOD (1.6)
A	PRK09529_1st	e3gitA3	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins (From Topology)	H: Fe-binding domain in prismane-like proteins (From Topology)	T: Fe-binding domain in prismane-like proteins	F: PRK09529_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
F	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
F	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
E	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
E	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
E	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
D	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
D	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
D	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
C	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
C	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
C	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
B	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
B	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
B	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
A	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
A	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
A	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF03598	CO dehydrogenase/acetyl-CoA synthase complex beta subunit (CdhC)	CO dehydrogenase/acetyl-CoA synthase complex beta subunit		Domain
A, B, C, D, E A, B, C, D, E, F	PF19436	ACS/CODH beta subunit C-terminal (ACS_CODH_B_C)	ACS/CODH beta subunit C-terminal	Acetyl-CoA synthase/CO dehydrogenase (ACS/CODH) is a bifunctional enzyme that catalyses the reversible reduction of CO2 to CO (CODH activity, the beta subunit) and the synthesis or degradation of acetyl-CoA (catalysed by ACS, the alpha subunit). CODH ...	Acetyl-CoA synthase/CO dehydrogenase (ACS/CODH) is a bifunctional enzyme that catalyses the reversible reduction of CO2 to CO (CODH activity, the beta subunit) and the synthesis or degradation of acetyl-CoA (catalysed by ACS, the alpha subunit). CODH contains the B-, C-, and D-clusters. This domain represents the middle and C-terminal regions of CODH which have an alpha/beta Rossmann-like fold and are the contribute ligands to the active site C-cluster. The C-cluster generates CO from CO2 and contains one Ni atom, four Fe atoms, and five labile sulfur atoms, arranged as an asymmetrical heteronuclear [Ni-4Fe-5S] cluster [1,2,6,7].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha	anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity acyltransferase activity CO-methylating acetyl-CoA synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity acyltransferase activity CO-methylating acetyl-CoA synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process sulfur compound metabolic process small molecule metabolic process amide metabolic process nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process sulfur compound metabolic process small molecule metabolic process amide metabolic process phosphorus metabolic process carbon fixation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR041350	Carbon monoxide dehydrogenase subunit alpha ,N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR016099	Prismane-like, alpha/beta-sandwich	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR004461	CO dehydrogenase/acetyl-CoA synthase complex beta subunit	Family
A, B, C, D, E A, B, C, D, E, F	IPR045822	CO dehydrogenase/acetyl-CoA synthase complex beta subunit , C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR038571	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase, domain 3 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR011254	Prismane-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.