3GG6 | pdb_00003gg6

Crystal structure of the NUDIX domain of human NUDT18

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3gg6a_	Alpha and beta proteins (a+b)	Nudix	Nudix	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	MutT-like	8058801	4001887	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nudix	8058802	3000098	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ring_hydroxyl_B	e3gg6A1	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: UBC-like	F: Ring_hydroxyl_B	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00293	NUDIX domain (NUDIX)	NUDIX domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Nucleoside diphosphate-linked moiety X motif 18	pyrophosphatase activity 8-oxo-GDP phosphatase activity nucleoside diphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity isoprenoid diphosphate phosphatase activity 8-oxo-dGDP phosphatase activity 8-hydroxy-dADP phosphatase activity cation binding ion binding binding metal ion binding pyrophosphatase activity 8-oxo-GDP phosphatase activity nucleoside diphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity isoprenoid diphosphate phosphatase activity 8-oxo-dGDP phosphatase activity 8-hydroxy-dADP phosphatase activity cation binding ion binding binding metal ion binding small molecule binding	catabolic process purine deoxyribonucleoside diphosphate catabolic process dGDP metabolic process organophosphate catabolic process carbohydrate derivative metabolic process nucleoside phosphate catabolic process deoxyribose phosphate catabolic process nucleobase-containing compound metabolic process purine deoxyribonucleoside diphosphate metabolic process purine nucleotide metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process dGDP catabolic process small molecule metabolic process catabolic process purine deoxyribonucleoside diphosphate catabolic process dGDP metabolic process organophosphate catabolic process carbohydrate derivative metabolic process nucleoside phosphate catabolic process deoxyribose phosphate catabolic process nucleobase-containing compound metabolic process purine deoxyribonucleoside diphosphate metabolic process purine nucleotide metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process dGDP catabolic process small molecule metabolic process phosphorus metabolic process nucleotide catabolic process nucleoside phosphate metabolic process purine nucleotide catabolic process purine deoxyribonucleotide catabolic process carbohydrate derivative catabolic process 2'-deoxyribonucleotide metabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process nucleobase-containing compound catabolic process purine-containing compound metabolic process nucleoside diphosphate metabolic process organophosphate metabolic process purine nucleoside diphosphate catabolic process purine deoxyribonucleotide metabolic process nucleoside diphosphate catabolic process deoxyribonucleoside diphosphate catabolic process metabolic process cellular process dADP catabolic process dADP metabolic process ribose phosphate metabolic process ribonucleotide catabolic process ribonucleotide metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process purine ribonucleotide catabolic process GDP catabolic process purine ribonucleoside diphosphate metabolic process purine ribonucleotide metabolic process purine ribonucleoside diphosphate catabolic process GDP metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000086	NUDIX hydrolase domain	Domain
A	IPR015797	NUDIX hydrolase-like domain superfamily	Homologous Superfamily
A	IPR042970	NUDT18, NUDIX hydrolase domain	Domain
A	IPR020084	NUDIX hydrolase, conserved site	Conserved Site
A	IPR020476	NUDIX hydrolase	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q6ZVK8	heart disease myocardial infarction large cell medulloblastoma psoriasis malignant mesothelioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.