3FZB | pdb_00003fzb

Crystal structure of the tail terminator protein from phage lambda (gpU-WT)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d3fzbj1	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
J	d3fzbj2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
I	d3fzbi_	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
H	d3fzbh_	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
G	d3fzbg1	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
G	d3fzbg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
F	d3fzbf1	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
F	d3fzbf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
E	d3fzbe_	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
D	d3fzbd1	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
D	d3fzbd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
C	d3fzbc1	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
C	d3fzbc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
B	d3fzbb1	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
B	d3fzbb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
A	d3fzba1	Alpha and beta proteins (a+b)	Phage tail protein-like	Phage tail protein-like	Lambda phage gpU-like	automated matches	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)
A	d3fzba2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bacteriophage lambda (Lambdavirus lambda ) [TaxId: 10710 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Ras	e3fzbJ1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
I	Ras	e3fzbI1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
H	Ras	e3fzbH1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
G	Ras	e3fzbG1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
F	Ras	e3fzbF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
E	Ras	e3fzbE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
D	Ras	e3fzbD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
C	Ras	e3fzbC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
B	Ras	e3fzbB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)
A	Ras	e3fzbA1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Ras	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)
I	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)
H	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)
G	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)
F	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)
E	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)
D	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)
C	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)
B	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)
A	3.30.70.1700	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Phage minor tail protein U	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF06141	Phage minor tail protein U (Phage_tail_U)	Phage minor tail protein U	Tail fibre component U of bacteriophage.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Minor tail protein U	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR035934	Phage tail protein-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR009312	Minor tail protein U-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR038512	GpU-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.