Crystal Structure of the transcriptional anti-activator ExsD from Pseudomonas aeruginosa
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2 Family | ExsD-like | 8046167 | 4004924 | SCOP2 (2022-06-29) |
| C | SCOP2 Superfamily | ExsD-like | 8092999 | 3002657 | SCOP2 (2022-06-29) |
| B | SCOP2B Superfamily | ExsD-like | 8092999 | 3002657 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ExsD-like | 8092999 | 3002657 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | NUDIX | e3fd9C1 | A: a/b three-layered sandwiches | X: HTH | H: Nudix | T: Nudix | F: NUDIX | ECOD (v294.1) |
| B | NUDIX | e3fd9B1 | A: a/b three-layered sandwiches | X: HTH | H: Nudix | T: Nudix | F: NUDIX | ECOD (v294.1) |
| A | ExsD | e3fd9A1 | A: a/b three-layered sandwiches | X: KorB C-terminal domain-like | H: N-terminal domain in transcriptional anti-activator ExsD | T: N-terminal domain in transcriptional anti-activator ExsD | F: ExsD | ECOD (v294.1) |
| A | ExsD_C | e3fd9A2 | A: a/b three-layered sandwiches | X: Long alpha-hairpin | H: Middle domain in transcriptional anti-activator ExsD | T: Middle domain in transcriptional anti-activator ExsD | F: ExsD_C | ECOD (v294.1) |
| A | ExsD_M | e3fd9A3 | A: a/b three-layered sandwiches | X: Long alpha-hairpin | H: helical hairpin domain in transcriptional anti-activator ExsD | T: helical hairpin domain in transcriptional anti-activator ExsD | F: ExsD_M | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 1.10.8.520 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
| C | 1.20.1270.190 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
| C | 1.10.287.1060 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | ESAT-6-like | CATH (4.3.0) |
| B | 1.10.8.520 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
| B | 1.20.1270.190 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
| B | 1.10.287.1060 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | ESAT-6-like | CATH (4.3.0) |
| A | 1.10.8.520 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
| A | 1.20.1270.190 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
| A | 1.10.287.1060 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | ESAT-6-like | CATH (4.3.0) |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR048312 | Antiactivator protein ExsD, C-terminal domain | Domain | |
| IPR048311 | Antiactivator protein ExsD, helical hairpin domain | Domain | |
| IPR043101 | Antiactivator protein ExsD, domain 1 | Homologous Superfamily | |
| IPR031835 | Antiactivator protein ExsD, N-terminal domain | Domain |
