Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | d3fbdd_ | Alpha and beta proteins (a+b) | His-Me finger endonucleases | His-Me finger endonucleases | HNH-motif | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
| A | d3fbda_ | Alpha and beta proteins (a+b) | His-Me finger endonucleases | His-Me finger endonucleases | HNH-motif | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | MIF | e3fbdD1 | A: alpha arrays | X: Alpha-beta plaits | H: Phage tail protein-like | T: Transmembrane protein 14A | F: MIF | ECOD (v295.2) |
| A | MIF | e3fbdA1 | A: alpha arrays | X: Alpha-beta plaits | H: Phage tail protein-like | T: Transmembrane protein 14A | F: MIF | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 3.90.540.10 | Alpha Beta | Alpha-Beta Complex | Colicin E7 immunity protein | Chain B, fragment: Endonuclease domain | CATH (4.3.0) |
| A | 3.90.540.10 | Alpha Beta | Alpha-Beta Complex | Colicin E7 immunity protein | Chain B, fragment: Endonuclease domain | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| 5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3' | - | - | - | |
| Colicin-E7 | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR024575 | Cloacin/colicin | Family | |
| IPR024566 | Colicin, receptor domain | Domain | |
| IPR016128 | Pyosin/cloacin translocation domain | Domain | |
| IPR036302 | Pyosin/cloacin translocation domain superfamily | Homologous Superfamily | |
| IPR037146 | Colicin/pyocin, DNase domain superfamily | Homologous Superfamily | |
| IPR044925 | His-Me finger superfamily | Homologous Superfamily | |
| IPR003615 | HNH nuclease | Domain |