3F7F | pdb_00003f7f

Structure of Nup120

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Nucleoporin beta-propeller domain	8090978	3000456	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleoporin beta-propeller domain	8090978	3000456	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleoporin beta-propeller domain	8090978	3000456	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleoporin beta-propeller domain	8090978	3000456	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GDI	e3f7fA1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F: GDI	ECOD (develop294)
B	NAGLU_N	e3f7fB1	A: alpha bundles	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: NAGLU_N	ECOD (develop294)
C	Rieske	e3f7fC1	A: alpha bundles	X: Lipocalins/Streptavidin	H: RIFT-related	T: acid protease	F: Rieske	ECOD (develop294)
C	Glyco_hydro_70	e3f7fC2	A: alpha bundles	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: Glyco_hydro_70	ECOD (develop294)
D	Rieske	e3f7fD2	A: alpha bundles	X: Lipocalins/Streptavidin	H: RIFT-related	T: acid protease	F: Rieske	ECOD (develop294)
D	Glyco_hydro_70	e3f7fD3	A: alpha bundles	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: Glyco_hydro_70	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF22114	Nucleoporin NUP120, helical domain (NUP120_helical_2)	Nucleoporin NUP120, helical domain	This domain is found in Nucleoporin NUP120 from Saccharomyces cerevisiae and similar fungal sequences. NUP120 is a a component of the nuclear pore complex (NPC) involved in nuclear poly(A)+ RNA and pre-ribosome export, in GSP1 nuclear import, in NPC ...	This domain is found in Nucleoporin NUP120 from Saccharomyces cerevisiae and similar fungal sequences. NUP120 is a a component of the nuclear pore complex (NPC) involved in nuclear poly(A)+ RNA and pre-ribosome export, in GSP1 nuclear import, in NPC assembly and distribution, as well as in nuclear envelope organisation. This entry represents the alpha-helical domain of NUP120, which packs against the side of the beta-propeller Pfam:PF11715, located N-terminal of the protein [1-4].	Domain
A, B, C, D	PF11715	Nucleoporin Nup120/160, beta-propeller domain (Beta-prop_Nup120_160)	Nucleoporin Nup120/160, beta-propeller domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Nucleoporin NUP120	structural molecule activity structural constituent of nuclear pore identical protein binding protein binding binding	nuclear pore localization cellular localization localization within membrane protein-containing complex localization cellular component organization localization nucleus organization organelle organization macromolecule localization cellular process cellular component organization or biogenesis telomere localization telomere tethering at nuclear periphery chromosome localization nuclear pore localization cellular localization localization within membrane protein-containing complex localization cellular component organization localization nucleus organization organelle organization macromolecule localization cellular process cellular component organization or biogenesis telomere localization telomere tethering at nuclear periphery chromosome localization organelle localization establishment of protein localization nucleocytoplasmic transport transport nuclear transport intracellular transport protein export from nucleus establishment of localization protein transport establishment of localization in cell intracellular protein localization nuclear export intracellular protein transport nitrogen compound transport mRNA transport mRNA export from nucleus RNA localization nucleobase-containing compound transport RNA transport nucleic acid transport gene expression macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process metabolic process macromolecule metabolic process establishment of organelle localization ribonucleoprotein complex biogenesis ribosomal subunit export from nucleus ribosomal large subunit export from nucleus cellular component biogenesis ribosome biogenesis ribosome localization protein localization to nucleus import into nucleus establishment of protein localization to organelle protein localization to organelle protein import into nucleus cellular response to stimulus response to stimulus response to heat response to temperature stimulus cellular response to stress response to stress cellular response to heat response to nitrogen compound mRNA export from nucleus in response to heat stress response to chemical response to abiotic stimulus subtelomeric heterochromatin formation regulation of cellular process negative regulation of biological process cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation heterochromatin organization regulation of macromolecule metabolic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process regulation of metabolic process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription double-strand break repair DNA metabolic process DNA damage response DNA repair chromosome organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process positive regulation of transcription by RNA polymerase II	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope nuclear pore membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope nuclear pore nuclear membrane membrane organelle membrane membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR021717	Nucleoporin Nup120/160	Family
A, B, C, D	IPR055090	Nucleoporin NUP120, helical domain, saccharomycetes	Domain
A, B, C, D	IPR059141	Nucleoporin Nup120/160, beta-propeller domain	Domain
A, B, C, D	IPR056548	Nucleoporin nup120-like, HEAT repeat domain, fungal	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Beta propellers	Nucleoporin Nup120/160

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.