3EZX | pdb_00003ezx

Structure of Methanosarcina barkeri monomethylamine corrinoid protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	B12-binding_2	e3ezxA4	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: RIFT-related	T: double psi	F: B12-binding_2	ECOD (v294.1)
A		e3ezxA2	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.1240.10	Mainly Alpha	Orthogonal Bundle	Methyltransferase, Methionine Synthase (B12-binding Domains)	Chain A, domain 1	CATH (4.3.0)
A	3.40.50.280	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Cobalamin-binding domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Monomethylamine corrinoid protein 1	cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding transferase activity, transferring one-carbon groups monomethylamine methyltransferase activity transferase activity methyltransferase activity catalytic activity vitamin binding cobalamin binding cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding transferase activity, transferring one-carbon groups monomethylamine methyltransferase activity transferase activity methyltransferase activity catalytic activity vitamin binding cobalamin binding tetrapyrrole binding heterocyclic compound binding methionine synthase activity S-methyltransferase activity	homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process alpha-amino acid metabolic process non-proteinogenic amino acid metabolic process metabolic process cellular process small molecule metabolic process sulfur compound metabolic process folic acid-containing compound metabolic process homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process alpha-amino acid metabolic process non-proteinogenic amino acid metabolic process metabolic process cellular process small molecule metabolic process sulfur compound metabolic process folic acid-containing compound metabolic process modified amino acid metabolic process tetrahydrofolate metabolic process pteridine-containing compound metabolic process cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis hydrocarbon biosynthetic process anaerobic respiration	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR003759	Cobalamin (vitamin B12)-binding module, cap domain	Domain
A	IPR050554	Methionine Synthase/Corrinoid	Family
A	IPR012741	Methyltransferase cognate corrinoid protein	Domain
A	IPR006158	Cobalamin (vitamin B12)-binding domain	Domain
A	IPR036724	Cobalamin-binding domain superfamily	Homologous Superfamily
A	IPR036594	Methionine synthase domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.