3EVY | pdb_00003evy

Crystal structure of a fragment of a putative type I restriction enzyme R protein from Bacteroides fragilis

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	HsdR C-terminal domain-like	8091626	3002528	SCOP2B (2022-06-29)
A	SCOP2 Family	HsdR C-terminal domain-like	8047102	4005449	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HsdR C-terminal domain-like	8091626	3002528	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	EcoR124_C_N	e3evyB1	A: alpha arrays	X: HSDR subunit helical domain (From Topology)	H: HSDR subunit helical domain (From Topology)	T: HSDR subunit helical domain	F: EcoR124_C_N	ECOD (1.6)
A	EcoR124_C_N	e3evyA1	A: alpha arrays	X: HSDR subunit helical domain (From Topology)	H: HSDR subunit helical domain (From Topology)	T: HSDR subunit helical domain	F: EcoR124_C_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.58.910	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)
A	1.20.58.910	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.2.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative type I restriction enzyme R protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding endonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity DNA nuclease activity ATP-dependent activity ATP-dependent activity, acting on DNA restriction endodeoxyribonuclease activity DNA endonuclease activity type I site-specific deoxyribonuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity DNA translocase activity DNA endonuclease activity, producing 5'-phosphomonoesters catalytic activity	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response DNA restriction-modification system defense response to symbiont response to external stimulus primary metabolic process clearance of foreign intracellular DNA clearance of foreign intracellular nucleic acids DNA metabolic process response to biotic stimulus nucleic acid metabolic process nucleobase-containing compound metabolic process DNA modification biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response DNA restriction-modification system defense response to symbiont response to external stimulus primary metabolic process clearance of foreign intracellular DNA clearance of foreign intracellular nucleic acids DNA metabolic process response to biotic stimulus nucleic acid metabolic process nucleobase-containing compound metabolic process DNA modification defense response to other organism response to stress macromolecule modification metabolic process cellular process response to external biotic stimulus macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR007409	Restriction endonuclease, type I, HsdR, N-terminal	Domain
A, B	IPR004473	Restriction endonuclease, type I, HsdR	Family
A, B	IPR040980	SWI2/SNF2 ATPase	Domain
A, B	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A, B	IPR022625	Type I restriction enzyme R protein, C-terminal	Domain
A, B	IPR055180	Restriction endonuclease, type I, HsdR, second RecA-like helicase domain	Domain
A, B	IPR051268	Type I restriction enzyme R subunit	Family
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.