3EFB | pdb_00003efb

Crystal Structure of Probable sor Operon Regulator from Shigella flexneri

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3efbd_	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	SorC sugar-binding domain-like	automated matches	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
C	d3efbc_	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	SorC sugar-binding domain-like	automated matches	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
B	d3efbb_	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	SorC sugar-binding domain-like	automated matches	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)
A	d3efba1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	SorC sugar-binding domain-like	Sor-operon regulator SorC	(Shigella flexneri 2a str. 2457T ) [TaxId: 198215 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	DeoR/SorC sugar-binding domain-like	8028651	4002188	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	NagB/RpiA/CoA transferase-like	8041030	3000693	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8041030	3000693	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8041030	3000693	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8041030	3000693	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	RS_preATP-grasp-like	e3efbD1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (develop294)
C	RS_preATP-grasp-like	e3efbC1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (develop294)
B	RS_preATP-grasp-like	e3efbB1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (develop294)
A	Sugar-bind	e3efbA1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: Sugar-bind	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.1360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	3.40.50.1360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.40.50.1360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.50.1360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Probable sor-operon regulator	binding carbohydrate binding DNA binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A, B, C, D	IPR051054	Bacterial SorC Transcriptional Regulators	Family
A, B, C, D	IPR007324	Sugar-binding domain, putative	Domain
A, B, C, D	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
A, B, C, D	IPR011991	ArsR-like helix-turn-helix domain	Domain
A, B, C, D	IPR007630	RNA polymerase sigma-70 region 4	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.