3EF4 | pdb_00003ef4

Crystal structure of native pseudoazurin from Hyphomicrobium denitrificans

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d3ef4c_	All beta proteins	Cupredoxin-like	Cupredoxins	automated matches	automated matches	(Hyphomicrobium denitrificans ) [TaxId: 53399 ],	SCOPe (2.08)
B	d3ef4b_	All beta proteins	Cupredoxin-like	Cupredoxins	automated matches	automated matches	(Hyphomicrobium denitrificans ) [TaxId: 53399 ],	SCOPe (2.08)
A	d3ef4a_	All beta proteins	Cupredoxin-like	Cupredoxins	automated matches	automated matches	(Hyphomicrobium denitrificans ) [TaxId: 53399 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Cupredoxins	8068807	3000886	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cupredoxins	8068807	3000886	SCOP2B (2022-06-29)
A	SCOP2 Family	Plastocyanin/azurin-like	8068806	4002150	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cupredoxins	8068807	3000886	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	IL7	e3ef4C1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (develop294)
B	IL7	e3ef4B1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (develop294)
A	Thioesterase	e3ef4A1	A: alpha bundles	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Thioesterase	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.60.40.420	Mainly Beta	Sandwich	Immunoglobulin-like	Cupredoxins - blue copper proteins	CATH (4.3.0)
B	2.60.40.420	Mainly Beta	Sandwich	Immunoglobulin-like	Cupredoxins - blue copper proteins	CATH (4.3.0)
A	2.60.40.420	Mainly Beta	Sandwich	Immunoglobulin-like	Cupredoxins - blue copper proteins	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Blue copper protein	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding electron transfer activity	-	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR002386	Amicyanin/Pseudoazurin	Family
A, B, C	IPR012745	Pseudoazurin	Family
A, B, C	IPR000923	Blue (type 1) copper domain	Domain
A, B, C	IPR008972	Cupredoxin	Homologous Superfamily
A, B, C	IPR001235	Blue (type 1) copper protein, plastocyanin-type	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.