3EBM | pdb_00003ebm

Crystal structure of human translationally controlled tumour associated protein (hTCTP) mutant E12V

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3ebma1	All beta proteins	Mss4-like	Mss4-like	Translationally controlled tumor protein TCTP (histamine-releasing factor)	Translationally controlled tumor protein TCTP (histamine-releasing factor)	man (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3ebma2	Artifacts	Tags	Tags	Tags	C-terminal Tags	man (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d3ebmd1	All beta proteins	Mss4-like	Mss4-like	Translationally controlled tumor protein TCTP (histamine-releasing factor)	Translationally controlled tumor protein TCTP (histamine-releasing factor)	man (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d3ebmd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	man (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3ebmc1	All beta proteins	Mss4-like	Mss4-like	Translationally controlled tumor protein TCTP (histamine-releasing factor)	Translationally controlled tumor protein TCTP (histamine-releasing factor)	man (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3ebmc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	man (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3ebmb1	All beta proteins	Mss4-like	Mss4-like	Translationally controlled tumor protein TCTP (histamine-releasing factor)	Translationally controlled tumor protein TCTP (histamine-releasing factor)	man (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3ebmb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	man (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Mss4-like	8042401	3001994	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Mss4-like	8042401	3001994	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Mss4-like	8042401	3001994	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Mss4-like	8042401	3001994	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pep_deformylase	e3ebmA1	A: alpha bundles	X: Alpha-beta plaits	H: FAD-dependent thiol oxidase	T: FAD-dependent thiol oxidase	F: Pep_deformylase	ECOD (develop294)
D	Ribosomal_L36	e3ebmD1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: Ribosomal_L36	ECOD (develop294)
C	Ribosomal_L36	e3ebmC1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: Ribosomal_L36	ECOD (develop294)
B	Ribosomal_L36	e3ebmB1	A: alpha bundles	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: Ribosomal_L36	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.170.150.10	Mainly Beta	Beta Complex	Metal Binding Protein, Guanine Nucleotide Exchange Factor	Chain A	CATH (4.3.0)
D	2.170.150.10	Mainly Beta	Beta Complex	Metal Binding Protein, Guanine Nucleotide Exchange Factor	Chain A	CATH (4.3.0)
C	2.170.150.10	Mainly Beta	Beta Complex	Metal Binding Protein, Guanine Nucleotide Exchange Factor	Chain A	CATH (4.3.0)
B	2.170.150.10	Mainly Beta	Beta Complex	Metal Binding Protein, Guanine Nucleotide Exchange Factor	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00838	Translationally controlled tumour protein (TCTP)	Translationally controlled tumour protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Translationally-controlled tumor protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding RNA binding nucleic acid binding transcription factor binding protein binding DNA-binding transcription factor binding	developmental process regulation of biological process regulation of ectoderm development regulation of developmental process negative regulation of developmental process biological regulation negative regulation of biological process tissue development negative regulation of ectoderm development ectoderm development anatomical structure development regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process developmental process regulation of biological process regulation of ectoderm development regulation of developmental process negative regulation of developmental process biological regulation negative regulation of biological process tissue development negative regulation of ectoderm development ectoderm development anatomical structure development regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis multicellular organismal process maintenance of cell number stem cell population maintenance biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus localization transport monoatomic ion transport monoatomic cation transport establishment of localization calcium ion transport metal ion transport cellular response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress regulation of signal transduction regulation of intrinsic apoptotic signaling pathway in response to DNA damage regulation of intrinsic apoptotic signaling pathway intracellular signal transduction negative regulation of cell communication cell communication cellular response to stress regulation of intracellular signal transduction response to stress negative regulation of apoptotic signaling pathway regulation of response to stress intrinsic apoptotic signaling pathway in response to DNA damage signal transduction intrinsic apoptotic signaling pathway regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway DNA damage response regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytoplasm cytosol endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle late endosome multivesicular body nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen polymeric cytoskeletal fiber cytoplasmic microtubule supramolecular fiber microtubule supramolecular polymer supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR018105	Translationally controlled tumour protein	Family
A, B, C, D	IPR011323	Mss4/translationally controlled tumour-associated TCTP	Homologous Superfamily
A, B, C, D	IPR034737	Translationally controlled tumour protein (TCTP) domain	Domain
A, B, C, D	IPR018103	Translationally controlled tumour protein, conserved site	Conserved Site
A, B, C, D	IPR011057	Mss4-like superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P13693	prostate cancer kidney cancer Malignant neoplasm of kidney kidney neoplasm ovarian cancer schizophrenia lung cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.