3E7N | pdb_00003e7n

Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
O	d3e7no1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
O	d3e7no2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
N	d3e7nn1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
N	d3e7nn2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
M	d3e7nm1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
M	d3e7nm2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
L	d3e7nl1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
L	d3e7nl2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
K	d3e7nk1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
K	d3e7nk2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
J	d3e7nj1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
J	d3e7nj2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
I	d3e7ni1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
I	d3e7ni2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
H	d3e7nh1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
H	d3e7nh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
G	d3e7ng1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
G	d3e7ng2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
F	d3e7nf1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
F	d3e7nf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
E	d3e7ne1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
E	d3e7ne2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
D	d3e7nd1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
D	d3e7nd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
C	d3e7nc1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
C	d3e7nc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
B	d3e7nb1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
B	d3e7nb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
A	d3e7na1	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)
A	d3e7na2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)
B	SCOP2 Family	RbsD-like	8080470	4001142	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	RbsD-like	8080471	3000903	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	RbsD-like	8080471	3000903	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O	e3e7nO1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
N	e3e7nN1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
M	e3e7nM1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
L	e3e7nL1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
K	e3e7nK1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
J	e3e7nJ1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
I	e3e7nI1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
H	e3e7nH1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
G	e3e7nG1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
F	e3e7nF1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
E	e3e7nE1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
D	e3e7nD1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
C	e3e7nC1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
B	e3e7nB1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Flavi_glycoprot	F:	ECOD (20:10:01)
A	e3e7nA1	A: Profilin-like	X: sensor domains	H: sensor domains	T: I-set	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
O	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
N	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
M	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
L	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
K	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
J	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
I	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
H	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
G	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
F	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
E	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
D	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
C	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
B	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
A	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF05025	RbsD / FucU transport protein family (RbsD_FucU)	RbsD / FucU transport protein family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	D-ribose high-affinity transport system	isomerase activity D-ribose pyranase activity catalytic activity intramolecular transferase activity intramolecular lyase activity binding monosaccharide binding carbohydrate binding small molecule binding	monosaccharide metabolic process carbohydrate metabolic process catabolic process carbohydrate catabolic process primary metabolic process small molecule metabolic process metabolic process cellular process pentose metabolic process monosaccharide catabolic process small molecule catabolic process pentose catabolic process D-ribose metabolic process D-ribose catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR023750	RbsD-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR007721	D-ribose pyranase RbsD/L-fucose mutarotase FucU	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR023064	D-ribose pyranase	Family