3E6U | pdb_00003e6u

Crystal structure of Human LanCL1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	LANC_like	e3e6uA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: LANC_like	ECOD (1.6)
B [auth C]	LANC_like	e3e6uC1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: LANC_like	ECOD (1.6)
C [auth B]	LANC_like	e3e6uB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: LANC_like	ECOD (1.6)
D	LANC_like	e3e6uD1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: LANC_like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
B [auth C]	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
C [auth B]	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
D	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth B], D	PF05147	Lanthionine synthetase C-like protein (LANC_like)	Lanthionine synthetase C-like protein	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth B], D	LanC-like protein 1	SH3 domain binding protein binding binding protein domain specific binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity amide binding modified amino acid binding ion binding oligopeptide binding anion binding glutathione binding SH3 domain binding protein binding binding protein domain specific binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity amide binding modified amino acid binding ion binding oligopeptide binding anion binding glutathione binding sulfur compound binding small molecule binding glutathione transferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity low-density lipoprotein particle receptor binding signaling receptor binding lipoprotein particle receptor binding cation binding transition metal ion binding zinc ion binding metal ion binding	peptide modification metabolic process cellular process peptide metabolic process carbohydrate metabolic process primary metabolic process cellular response to stimulus cellular detoxification cellular response to chemical stimulus response to stimulus response to chemical detoxification cellular response to toxic substance response to toxic substance peptide modification metabolic process cellular process peptide metabolic process carbohydrate metabolic process primary metabolic process cellular response to stimulus cellular detoxification cellular response to chemical stimulus response to stimulus response to chemical detoxification cellular response to toxic substance response to toxic substance regulation of biological process regulation of cellular process signaling biological regulation G protein-coupled receptor signaling pathway signal transduction cell communication	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth B], D	IPR007822	Lanthionine synthetase C-like	Family
A, B [auth C], C [auth B], D	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A, B [auth C], C [auth B], D	IPR020464	LanC-like protein, eukaryotic	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C], C [auth B], D	Pharos: O43813	atypical teratoid rhabdoid tumor large cell medulloblastoma malignant glioma osteosarcoma progressive supranuclear palsy breast cancer lung cancer malignant mesothelioma ovarian cancer subependymal giant cell astrocytoma glioblastoma malignant ependymoma medulloblastoma Pick disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.