Annotations: 3DKY

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	YgbB	e3dkyF1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
E	YgbB	e3dkyE1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
D	YgbB	e3dkyD1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
C	YgbB	e3dkyC1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
B	YgbB	e3dkyB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)
A	YgbB	e3dkyA1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295)

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (4.3.0)
F	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (4.3.0)
E	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (4.3.0)
E	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (4.3.0)
D	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (4.3.0)
D	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (4.3.0)
C	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (4.3.0)
C	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (4.3.0)
B	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (4.3.0)
B	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (4.3.0)
A	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (4.3.0)
A	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (4.3.0)

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Replication protein repB	DNA binding binding nucleic acid binding identical protein binding protein binding nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on DNA DNA topoisomerase activity catalytic activity, acting on a nucleic acid catalytic activity macromolecular conformation isomerase activity	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	intracellular anatomical structure cellular anatomical structure extrachromosomal circular DNA extrachromosomal DNA

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR041919	Plasmid replication protein, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002631	Plasmid replication protein, origin binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3DKY | pdb_00003dky