3D4R | pdb_00003d4r

CRYSTAL STRUCTURE OF a DUF2118 family protein (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyMMP0046 N-terminal domain-like 8092003 3002550 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySingle hybrid motif 8092002 3001880 SCOP2B (2022-06-29)
ESCOP2B SuperfamilySingle hybrid motif 8092002 3001880 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyMMP0046 N-terminal domain-like 8092003 3002550 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySingle hybrid motif 8092002 3001880 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMMP0046 N-terminal domain-like 8092003 3002550 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMMP0046 N-terminal domain-like 8092003 3002550 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySingle hybrid motif 8092002 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySingle hybrid motif 8092002 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMMP0046 N-terminal domain-like 8092003 3002550 SCOP2B (2022-06-29)
ASCOP2 FamilyMMP0046-like 8045759 4004666 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyMMP0046 N-terminal domain-like 8092003 3002550 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySingle hybrid motif 8092002 3001880 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FRasGEFe3d4rF1 A: alpha bundlesX: HTHH: NudixT: NudixF: RasGEFECOD (develop294)
ERasGEFe3d4rE1 A: alpha bundlesX: HTHH: NudixT: NudixF: RasGEFECOD (develop294)
DRasGEFe3d4rD1 A: alpha bundlesX: HTHH: NudixT: NudixF: RasGEFECOD (develop294)
CRasGEFe3d4rC1 A: alpha bundlesX: HTHH: NudixT: NudixF: RasGEFECOD (develop294)
BRasGEFe3d4rB1 A: alpha bundlesX: HTHH: NudixT: NudixF: RasGEFECOD (develop294)
ADUF2118e3d4rA1 A: alpha bundlesX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: DUF2118ECOD (develop294)
ADUF2118e3d4rA2 A: alpha bundlesX: HTHH: N-terminal domain in DUF2118 familyT: N-terminal domain in DUF2118 familyF: DUF2118ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F2.40.128.400 Mainly Beta Beta Barrel Lipocalin CATH (4.3.0)
F2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
E2.40.128.400 Mainly Beta Beta Barrel Lipocalin CATH (4.3.0)
E2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
D2.40.128.400 Mainly Beta Beta Barrel Lipocalin CATH (4.3.0)
D2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
C2.40.128.400 Mainly Beta Beta Barrel Lipocalin CATH (4.3.0)
C2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
B2.40.128.400 Mainly Beta Beta Barrel Lipocalin CATH (4.3.0)
B2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
A2.40.128.400 Mainly Beta Beta Barrel Lipocalin CATH (4.3.0)
A2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF09891Uncharacterized protein conserved in archaea (DUF2118) (DUF2118)Uncharacterized protein conserved in archaea (DUF2118)- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR019217Protein of unknown function DUF2118Family