3CYQ | pdb_00003cyq

The crystal structure of the complex of the C-terminal domain of Helicobacter pylori MotB (residues 125-256) with N-acetylmuramic acid

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
I [auth A]	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	OmpA-like	8092164	3001650	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	RasGEF	e3cyqP1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
O	RasGEF	e3cyqO1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
N	RasGEF	e3cyqN1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
M	RasGEF	e3cyqM1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
L	RasGEF	e3cyqL1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
K	RasGEF	e3cyqK1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
J	RasGEF	e3cyqJ1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
I [auth A]	RasGEF	e3cyqA1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
H [auth I]	RasGEF	e3cyqI1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
G [auth H]	RasGEF	e3cyqH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
F [auth G]	RasGEF	e3cyqG1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
E [auth F]	RasGEF	e3cyqF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
D [auth E]	RasGEF	e3cyqE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
C [auth D]	RasGEF	e3cyqD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
B [auth C]	RasGEF	e3cyqC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
A [auth B]	RasGEF	e3cyqB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
O	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
N	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
M	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
L	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
K	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
J	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
I [auth A]	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
H [auth I]	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
G [auth H]	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
F [auth G]	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
E [auth F]	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
D [auth E]	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
C [auth D]	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
B [auth C]	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
A [auth B]	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth A], J, K, L, M, N, O, P	PF00691	OmpA family (OmpA)	OmpA family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth A], J, K, L, M, N, O, P	Chemotaxis protein motB	identical protein binding protein binding binding	chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum stator complex bacterial-type flagellum basal body protein-containing complex bacterial-type flagellum motor plasma membrane protein complex membrane plasma membrane membrane protein complex cell periphery cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth A], J, K, L, M, N, O, P	IPR006665	OmpA-like domain	Domain
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth A], J, K, L, M, N, O, P	IPR025713	Motility protein B-like, N-terminal domain	Domain
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth A], J, K, L, M, N, O, P	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth A], J, K, L, M, N, O, P	IPR036737	OmpA-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.