3CT6 | pdb_00003ct6

Crystal structure of DhaM of L. lactis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3ct6b2	Alpha and beta proteins (a/b)	PTS system fructose IIA component-like	PTS system fructose IIA component-like	DhaM-like	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM	(Lactococcus lactis ) [TaxId: 1358 ],	SCOPe (2.08)
B	d3ct6b3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Lactococcus lactis ) [TaxId: 1358 ],	SCOPe (2.08)
A	d3ct6a1	Alpha and beta proteins (a/b)	PTS system fructose IIA component-like	PTS system fructose IIA component-like	DhaM-like	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM	(Lactococcus lactis ) [TaxId: 1358 ],	SCOPe (2.08)
A	d3ct6a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Lactococcus lactis ) [TaxId: 1358 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PTS system fructose IIA component-like	8040293	3000475	SCOP2B (2022-06-29)
A	SCOP2 Family	DhaM-like	8027914	4002272	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PTS system fructose IIA component-like	8040293	3000475	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	NAD_binding_1	e3ct6B1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_1	ECOD (develop294)
A	EIIA-man	e3ct6A1	A: alpha bundles	X: EDD domain	H: EDD domain	T: EDD domain	F: EIIA-man	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
A	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03610	PTS system fructose IIA component (EIIA-man)	PTS system fructose IIA component	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase activity phosphoenolpyruvate-glycerone phosphotransferase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport carbohydrate metabolic process polyol metabolic process alcohol catabolic process import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport carbohydrate metabolic process polyol metabolic process alcohol catabolic process catabolic process polyol catabolic process carbohydrate catabolic process primary metabolic process alcohol metabolic process alditol catabolic process glycerol metabolic process glycerol catabolic process metabolic process small molecule metabolic process small molecule catabolic process	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036662	Phosphotransferase system, mannose-type IIA component superfamily	Homologous Superfamily
A, B	IPR004701	Phosphotransferase system, mannose-type IIA component	Domain
A, B	IPR012844	Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain	Domain
A, B	IPR039643	Dihydroxyacetone kinase phosphotransferase subunit DhaM	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.